Homologs in group_2336

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_18340 FBDBKF_18340 70.1 Morganella morganii S1 pasI RnfH family protein
EHELCC_18375 EHELCC_18375 70.1 Morganella morganii S2 pasI RnfH family protein
NLDBIP_18300 NLDBIP_18300 70.1 Morganella morganii S4 pasI RnfH family protein
LHKJJB_18495 LHKJJB_18495 70.1 Morganella morganii S3 pasI RnfH family protein
HKOGLL_18230 HKOGLL_18230 70.1 Morganella morganii S5 pasI RnfH family protein
F4V73_RS01870 F4V73_RS01870 64.9 Morganella psychrotolerans - RnfH family protein

Distribution of the homologs in the orthogroup group_2336

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2336

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
B4F063 3.33e-66 196 100 0 97 3 rnfH Protein RnfH Proteus mirabilis (strain HI4320)
Q83K06 2.01e-42 136 72 0 95 3 rnfH Protein RnfH Shigella flexneri
B2TYP0 4.94e-42 135 74 0 93 3 rnfH Protein RnfH Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
B6I639 4.94e-42 135 74 0 93 3 rnfH Protein RnfH Escherichia coli (strain SE11)
B1IVL6 4.94e-42 135 74 0 93 3 rnfH Protein RnfH Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A3C4 4.94e-42 135 74 0 93 3 rnfH Protein RnfH Escherichia coli O9:H4 (strain HS)
B1XBT8 4.94e-42 135 74 0 93 3 rnfH Protein RnfH Escherichia coli (strain K12 / DH10B)
C4ZYN5 4.94e-42 135 74 0 93 3 rnfH Protein RnfH Escherichia coli (strain K12 / MC4100 / BW2952)
B7M987 4.94e-42 135 74 0 93 3 rnfH Protein RnfH Escherichia coli O8 (strain IAI1)
B7LDK6 4.94e-42 135 74 0 93 3 rnfH Protein RnfH Escherichia coli (strain 55989 / EAEC)
A7ZQ58 4.94e-42 135 74 0 93 3 rnfH Protein RnfH Escherichia coli O139:H28 (strain E24377A / ETEC)
P52119 4.94e-42 135 74 0 93 1 ratB UPF0125 protein RatB Escherichia coli (strain K12)
Q7N1U3 5.03e-42 135 65 0 97 3 plu3376 UPF0125 protein plu3376 Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
B1LPC5 7.66e-42 135 74 0 93 3 rnfH Protein RnfH Escherichia coli (strain SMS-3-5 / SECEC)
B7N6K3 7.66e-42 135 74 0 93 3 rnfH Protein RnfH Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
B7NSB6 7.66e-42 135 74 0 93 3 rnfH Protein RnfH Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B7LUV6 2.34e-41 134 73 0 93 3 rnfH Protein RnfH Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
Q0TEM2 3.48e-41 133 74 0 93 3 rnfH Protein RnfH Escherichia coli O6:K15:H31 (strain 536 / UPEC)
B7MIV5 3.48e-41 133 74 0 93 3 rnfH Protein RnfH Escherichia coli O45:K1 (strain S88 / ExPEC)
B7UH66 3.48e-41 133 74 0 93 3 rnfH Protein RnfH Escherichia coli O127:H6 (strain E2348/69 / EPEC)
Q8FEY5 3.48e-41 133 74 0 93 1 pasI Persistence and stress-resistance antitoxin PasI Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P58318 4.94e-41 133 73 0 93 3 yfjF UPF0125 protein YfjF Escherichia coli O157:H7
B5Z235 4.94e-41 133 73 0 93 3 rnfH Protein RnfH Escherichia coli O157:H7 (strain EC4115 / EHEC)
B7MYQ6 1.62e-40 132 73 0 93 3 rnfH Protein RnfH Escherichia coli O81 (strain ED1a)
A8GI44 3.58e-40 130 67 0 94 3 rnfH Protein RnfH Serratia proteamaculans (strain 568)
B5XVJ5 4.01e-40 130 71 0 92 3 rnfH Protein RnfH Klebsiella pneumoniae (strain 342)
A8ANF0 1.63e-39 129 70 0 94 3 rnfH Protein RnfH Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
A7MHX8 1.97e-39 129 68 0 93 3 rnfH Protein RnfH Cronobacter sakazakii (strain ATCC BAA-894)
C6D972 8.93e-39 127 64 0 95 3 rnfH Protein RnfH Pectobacterium carotovorum subsp. carotovorum (strain PC1)
P0A2L7 4.58e-38 125 70 0 90 3 yfjF UPF0125 protein YfjF Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A2L8 4.58e-38 125 70 0 90 3 yfjF UPF0125 protein YfjF Salmonella typhi
B4TS65 4.58e-38 125 70 0 90 3 rnfH Protein RnfH Salmonella schwarzengrund (strain CVM19633)
B4T2C3 4.58e-38 125 70 0 90 3 rnfH Protein RnfH Salmonella newport (strain SL254)
B4TE61 4.58e-38 125 70 0 90 3 rnfH Protein RnfH Salmonella heidelberg (strain SL476)
B5RD94 4.58e-38 125 70 0 90 3 rnfH Protein RnfH Salmonella gallinarum (strain 287/91 / NCTC 13346)
B5QUH3 4.58e-38 125 70 0 90 3 rnfH Protein RnfH Salmonella enteritidis PT4 (strain P125109)
B5FS17 4.58e-38 125 70 0 90 3 rnfH Protein RnfH Salmonella dublin (strain CT_02021853)
Q57L20 4.58e-38 125 70 0 90 3 rnfH Protein RnfH Salmonella choleraesuis (strain SC-B67)
B5F298 4.58e-38 125 70 0 90 3 rnfH Protein RnfH Salmonella agona (strain SL483)
A7FKS6 1.33e-37 124 65 0 94 3 rnfH Protein RnfH Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
Q8ZH12 1.52e-36 122 64 0 94 3 YPO1103 UPF0125 protein YPO1103/y3077/YP_1053 Yersinia pestis
B1JG69 1.52e-36 122 64 0 94 3 rnfH Protein RnfH Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
A4TNV0 1.52e-36 122 64 0 94 3 rnfH Protein RnfH Yersinia pestis (strain Pestoides F)
Q1CFK8 1.52e-36 122 64 0 94 3 rnfH Protein RnfH Yersinia pestis bv. Antiqua (strain Nepal516)
A9R2E0 1.52e-36 122 64 0 94 3 rnfH Protein RnfH Yersinia pestis bv. Antiqua (strain Angola)
B2K8D9 1.52e-36 122 64 0 94 3 rnfH Protein RnfH Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q1CAH3 1.52e-36 122 64 0 94 3 rnfH Protein RnfH Yersinia pestis bv. Antiqua (strain Antiqua)
B2VEC2 2.71e-36 121 62 0 95 3 rnfH Protein RnfH Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99)
Q2NRZ8 3e-35 118 60 0 94 3 rnfH Protein RnfH Sodalis glossinidius (strain morsitans)
Q15V26 2.44e-34 116 62 0 93 3 rnfH Protein RnfH Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087)
Q9CP88 1.59e-32 112 54 0 91 3 PM0166 UPF0125 protein PM0166 Pasteurella multocida (strain Pm70)
A6VPR2 1.88e-32 111 55 1 97 3 rnfH Protein RnfH Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 43843 / 130Z)
Q65V45 7.6e-32 110 56 0 89 3 rnfH Protein RnfH Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
A5UA93 3.62e-30 105 53 0 89 3 rnfH Protein RnfH Haemophilus influenzae (strain PittEE)
P43994 4.55e-30 105 53 0 89 1 HI_0395 UPF0125 protein HI_0395 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A5UGR1 4.55e-30 105 53 0 89 3 rnfH Protein RnfH Haemophilus influenzae (strain PittGG)
Q4QNE7 4.55e-30 105 53 0 89 1 rnfH Protein RnfH Haemophilus influenzae (strain 86-028NP)
P0C6P8 5.99e-29 102 58 0 90 3 VC_0850 UPF0125 protein VC_0850 Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A5F377 5.99e-29 102 58 0 90 3 VC0395_A0376 UPF0125 protein VC0395_A0376/VC395_0866 Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Q7VKP5 6.35e-29 102 52 0 95 3 HD_1828 UPF0125 protein HD_1828 Haemophilus ducreyi (strain 35000HP / ATCC 700724)
Q7MN97 2.29e-28 102 57 0 91 3 VV0820 UPF0125 protein VV0820 Vibrio vulnificus (strain YJ016)
Q8DF55 2.29e-28 102 57 0 91 3 VV1_0369 UPF0125 protein VV1_0369 Vibrio vulnificus (strain CMCP6)
Q87RY0 1.14e-27 100 56 0 90 3 VP0646 UPF0125 protein VP0646 Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Q8K9R6 1.21e-26 97 52 0 90 3 BUsg_244 UPF0125 protein BUsg_244 Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q7NSG4 5.86e-26 95 48 0 92 3 CV_3462 UPF0125 protein CV_3462 Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / CCUG 213 / NBRC 12614 / NCIMB 9131 / NCTC 9757 / MK)
P57341 1.09e-24 92 48 0 86 3 BU253 UPF0125 protein BU253 Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
B8D7F0 1.3e-24 92 48 0 86 3 rnfH Protein RnfH Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7)
B8D946 1.4e-24 91 48 0 86 3 rnfH Protein RnfH Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A)
Q3IE34 1.66e-24 91 48 0 90 3 rnfH Protein RnfH Pseudoalteromonas translucida (strain TAC 125)
C4L8Z0 2.7e-24 90 47 0 94 3 rnfH Protein RnfH Tolumonas auensis (strain DSM 9187 / NBRC 110442 / TA 4)
B2JIA4 7.95e-24 90 52 0 90 3 rnfH Protein RnfH Paraburkholderia phymatum (strain DSM 17167 / CIP 108236 / LMG 21445 / STM815)
B6EKA7 1.72e-22 86 53 0 83 3 rnfH Protein RnfH Aliivibrio salmonicida (strain LFI1238)
A2SB99 2.1e-22 86 47 0 90 3 rnfH Protein RnfH Burkholderia mallei (strain NCTC 10229)
A1SV86 2.25e-22 86 48 0 92 3 rnfH Protein RnfH Psychromonas ingrahamii (strain DSM 17664 / CCUG 51855 / 37)
C1D4H9 3.01e-22 86 50 0 90 3 rnfH Protein RnfH Laribacter hongkongensis (strain HLHK9)
Q2SMN3 9.31e-21 82 46 1 92 3 rnfH Protein RnfH Hahella chejuensis (strain KCTC 2396)
P67259 1.41e-19 79 41 0 87 3 NMB0796 UPF0125 protein NMB0796 Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
P67258 1.41e-19 79 41 0 87 3 NMA1005 UPF0125 protein NMA1005 Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491)
A1KT54 1.41e-19 79 41 0 87 3 rnfH Protein RnfH Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / DSM 15464 / FAM18)
A9M3M8 1.41e-19 79 41 0 87 3 rnfH Protein RnfH Neisseria meningitidis serogroup C (strain 053442)
B4RK79 6.17e-19 77 40 0 87 3 rnfH Protein RnfH Neisseria gonorrhoeae (strain NCCP11945)
Q5F9L3 6.17e-19 77 40 0 87 3 rnfH Protein RnfH Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)
A4XYG1 6.65e-19 77 42 2 96 3 rnfH Protein RnfH Pseudomonas mendocina (strain ymp)
Q13XD8 9.8e-19 77 45 0 93 3 rnfH Protein RnfH Paraburkholderia xenovorans (strain LB400)
A1WX38 1.18e-18 76 45 0 81 3 rnfH Protein RnfH Halorhodospira halophila (strain DSM 244 / SL1)
O68561 1.21e-18 76 40 2 99 3 PA4766 UPF0125 protein PA4766 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
B7V1H8 1.21e-18 76 40 2 99 3 rnfH Protein RnfH Pseudomonas aeruginosa (strain LESB58)
Q8EGW6 1.25e-18 77 43 0 91 3 SO_1475 UPF0125 protein SO_1475 Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)
Q02FQ6 1.35e-18 76 40 2 99 3 rnfH Protein RnfH Pseudomonas aeruginosa (strain UCBPP-PA14)
Q470F9 3.09e-18 75 41 0 89 3 rnfH Protein RnfH Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197)
Q603I8 1.1e-17 74 48 0 83 3 rnfH Protein RnfH Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath)
Q83C31 3.2e-16 70 41 0 90 3 CBU_1303 UPF0125 protein CBU_1303 Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
A9KGA1 3.2e-16 70 41 0 90 3 rnfH Protein RnfH Coxiella burnetii (strain Dugway 5J108-111)
B6IZH9 3.2e-16 70 41 0 90 3 rnfH Protein RnfH Coxiella burnetii (strain CbuG_Q212)
B6J7V9 8.8e-16 69 40 0 90 3 rnfH Protein RnfH Coxiella burnetii (strain CbuK_Q154)
Q2W402 1.63e-15 68 42 0 80 3 rnfH Protein RnfH Paramagnetospirillum magneticum (strain ATCC 700264 / AMB-1)
Q87WN4 5.52e-15 67 38 2 98 3 PSPTO_4512 UPF0125 protein PSPTO_4512 Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)
A9N8I3 9.32e-15 67 40 0 90 3 rnfH Protein RnfH Coxiella burnetii (strain RSA 331 / Henzerling II)
A6VCM3 1.32e-14 66 37 1 89 3 rnfH Protein RnfH Pseudomonas aeruginosa (strain PA7)
Q0VSU3 4.25e-14 65 43 3 96 3 rnfH Protein RnfH Alcanivorax borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB 13689 / SK2)
Q9F5Y0 6.29e-14 64 45 0 70 1 rnfH Protein RnfH Azotobacter vinelandii (strain DJ / ATCC BAA-1303)
Q4KIH6 7.48e-14 64 42 2 85 3 rnfH Protein RnfH Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)
Q1IF64 1.14e-13 64 39 2 86 3 rnfH Protein RnfH Pseudomonas entomophila (strain L48)
P57111 7.19e-13 61 41 0 70 3 rnfH Protein RnfH Stutzerimonas stutzeri
Q3KIA5 4.91e-12 60 40 1 83 3 rnfH Protein RnfH Pseudomonas fluorescens (strain Pf0-1)
Q3IXC0 6.81e-11 56 39 0 83 3 rnfH Protein RnfH Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.)
A3PRP9 9.12e-11 56 39 0 83 3 rnfH Protein RnfH Cereibacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)
Q48E57 3.1e-09 52 37 2 83 3 rnfH Protein RnfH Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6)
P97056 1.35e-08 50 38 1 84 3 rnfH Protein RnfH Rhodobacter capsulatus
Q89AN0 3.06e-08 49 32 3 89 3 bbp_234 UPF0125 protein bbp_234 Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q4ZNP2 3.17e-08 50 35 2 87 3 rnfH Protein RnfH Pseudomonas syringae pv. syringae (strain B728a)
Q87BS2 1.55e-05 42 65 1 32 3 PD_1376 UPF0125 protein PD_1376 Xylella fastidiosa (strain Temecula1 / ATCC 700964)
Q9PAZ9 6.97e-05 41 62 1 32 3 XF_2346 UPF0125 protein XF_2346 Xylella fastidiosa (strain 9a5c)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS09395
Feature type CDS
Gene -
Product RnfH family protein
Location 2049484 - 2049777 (strand: -1)
Length 294 (nucleotides) / 97 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2336
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03658 RnfH family Ubiquitin

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2914 Defense mechanisms (V) V Putative antitoxin component PasI (RatB) of the RatAB toxin-antitoxin module, ubiquitin-RnfH superfamily

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K09801 uncharacterized protein - -

Protein Sequence

MTKIWVEVAYALPDKQYVIPVELTLGDTVEQAIIASNILTICNDIDLTKNKVGIYSRPAKLSDNVRDGDRVEIYRPLIADPKEMRRKRAEKARQKTE

Flanking regions ( +/- flanking 50bp)

AACAAATAATATGGTGCAGGCGTTTACTCAAAGAGCGAAAGAGATTTATCGTGACTAAAATATGGGTTGAGGTAGCCTACGCGTTACCAGATAAACAATATGTTATCCCTGTGGAGCTAACACTGGGGGATACTGTTGAACAAGCAATTATTGCCTCAAATATTTTAACGATTTGTAATGATATCGATTTAACTAAAAATAAAGTGGGTATCTATAGTCGGCCAGCAAAATTGAGTGATAATGTGCGTGATGGCGATCGCGTTGAAATCTATCGACCGTTAATCGCTGATCCTAAAGAGATGCGCCGTAAACGCGCTGAAAAAGCACGCCAAAAAACTGAATAGTTAACATTTTCACCACGTCATAATCAAATCATTGTATCTCATTGATTGCG