PF03626


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03626, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03626
Description Prokaryotic Cytochrome C oxidase subunit IV

Occurence in the database

PF03626 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2102 FBDBKF_15825 14894 15226 -1 cyoD cytochrome o ubiquinol oxidase subunit IV Morganella morganii S1
1 group_2102 EHELCC_18425 2333 2665 -1 cyoD cytochrome o ubiquinol oxidase subunit IV Morganella morganii S2
2 group_2102 NLDBIP_17260 2333 2665 -1 cyoD cytochrome o ubiquinol oxidase subunit IV Morganella morganii S4
3 group_2102 LHKJJB_17400 53523 53855 1 cyoD cytochrome o ubiquinol oxidase subunit IV Morganella morganii S3
4 group_2102 HKOGLL_16995 2333 2665 -1 cyoD cytochrome o ubiquinol oxidase subunit IV Morganella morganii S5
5 group_2102 F4V73_RS16485 116450 116782 1 cytochrome o ubiquinol oxidase subunit IV Morganella psychrotolerans
6 group_2102 PMI_RS00505 131351 131683 -1 cytochrome o ubiquinol oxidase subunit IV Proteus mirabilis HI4320