PF03502


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03502, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03502
Description Nucleoside-specific channel-forming protein, Tsx

Occurence in the database

PF03502 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2106 FBDBKF_15845 19141 19899 -1 Nucleoside-specific channel-forming protein, Tsx Morganella morganii S1
1 group_2106 EHELCC_18445 6580 7338 -1 Nucleoside-specific channel-forming protein, Tsx Morganella morganii S2
2 group_2106 NLDBIP_17280 6580 7338 -1 Nucleoside-specific channel-forming protein, Tsx Morganella morganii S4
3 group_2106 LHKJJB_17380 48850 49608 1 Nucleoside-specific channel-forming protein, Tsx Morganella morganii S3
4 group_2106 HKOGLL_17015 6580 7338 -1 Nucleoside-specific channel-forming protein, Tsx Morganella morganii S5
5 group_2106 F4V73_RS16465 111776 112534 1 outer membrane protein OmpK Morganella psychrotolerans
6 group_2106 PMI_RS00525 135728 136489 -1 outer membrane protein OmpK Proteus mirabilis HI4320