PF03449


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03449, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03449
Description Transcription elongation factor, N-terminal

Occurence in the database

PF03449 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1395 FBDBKF_08615 105261 105737 1 greA transcription elongation factor GreA Morganella morganii S1
1 group_1630 FBDBKF_10735 115556 116041 1 greB transcription elongation factor GreB Morganella morganii S1
2 group_1395 EHELCC_12910 57988 58464 -1 greA transcription elongation factor GreA Morganella morganii S2
3 group_1630 EHELCC_15070 115546 116031 1 greB transcription elongation factor GreB Morganella morganii S2
4 group_1395 NLDBIP_13250 57988 58464 -1 greA transcription elongation factor GreA Morganella morganii S4
5 group_1630 NLDBIP_14900 115546 116031 1 greB transcription elongation factor GreB Morganella morganii S4
6 group_1395 LHKJJB_13305 103979 104455 1 greA transcription elongation factor GreA Morganella morganii S3
7 group_1630 LHKJJB_14445 25695 26180 -1 greB transcription elongation factor GreB Morganella morganii S3
8 group_1395 HKOGLL_11725 57988 58464 -1 greA transcription elongation factor GreA Morganella morganii S5
9 group_1630 HKOGLL_13065 25695 26180 -1 greB transcription elongation factor GreB Morganella morganii S5
10 group_1395 F4V73_RS09840 72373 72849 1 greA transcription elongation factor GreA Morganella psychrotolerans
11 group_1630 F4V73_RS14450 119346 119831 1 greB transcription elongation factor GreB Morganella psychrotolerans
12 group_1630 PMI_RS14285 3171371 3171850 1 greB transcription elongation factor GreB Proteus mirabilis HI4320
13 group_1395 PMI_RS16970 3735782 3736258 1 greA transcription elongation factor GreA Proteus mirabilis HI4320