PF03372


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03372, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03372
Description Endonuclease/Exonuclease/phosphatase family

Occurence in the database

PF03372 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_975 FBDBKF_05390 86350 87159 1 xthA exodeoxyribonuclease III Morganella morganii S1
1 group_2360 FBDBKF_19040 24460 25167 -1 yafD endonuclease/exonuclease/phosphatase family protein Morganella morganii S1
2 group_975 EHELCC_12200 94335 95144 -1 xthA exodeoxyribonuclease III Morganella morganii S2
3 group_2360 EHELCC_18785 24460 25167 -1 yafD endonuclease/exonuclease/phosphatase family protein Morganella morganii S2
4 group_975 NLDBIP_12540 94290 95099 -1 xthA exodeoxyribonuclease III Morganella morganii S4
5 group_2360 NLDBIP_18520 346 1053 1 yafD endonuclease/exonuclease/phosphatase family protein Morganella morganii S4
6 group_975 LHKJJB_12400 94335 95144 -1 xthA exodeoxyribonuclease III Morganella morganii S3
7 group_2360 LHKJJB_18655 24460 25167 -1 yafD endonuclease/exonuclease/phosphatase family protein Morganella morganii S3
8 group_975 HKOGLL_11015 94335 95144 -1 xthA exodeoxyribonuclease III Morganella morganii S5
9 group_2360 HKOGLL_18390 24460 25167 -1 yafD endonuclease/exonuclease/phosphatase family protein Morganella morganii S5
10 group_975 F4V73_RS05845 1243255 1244064 1 xthA exodeoxyribonuclease III Morganella psychrotolerans
11 group_2360 F4V73_RS13945 424487 425272 -1 endonuclease/exonuclease/phosphatase family protein Morganella psychrotolerans
12 group_975 PMI_RS07245 1585886 1586692 1 xthA exodeoxyribonuclease III Proteus mirabilis HI4320
13 group_2360 PMI_RS11120 2447528 2448313 -1 endonuclease/exonuclease/phosphatase family protein Proteus mirabilis HI4320