PF03330


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03330, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03330
Description Lytic transglycolase

Occurence in the database

PF03330 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1558 FBDBKF_10090 110551 111540 1 rlpA endolytic peptidoglycan transglycosylase RlpA Morganella morganii S1
1 group_1558 EHELCC_04890 302516 303505 1 rlpA endolytic peptidoglycan transglycosylase RlpA Morganella morganii S2
2 group_1558 NLDBIP_04890 302312 303301 1 rlpA endolytic peptidoglycan transglycosylase RlpA Morganella morganii S4
3 group_1558 LHKJJB_13740 32077 33066 -1 rlpA endolytic peptidoglycan transglycosylase RlpA Morganella morganii S3
4 group_1558 HKOGLL_12795 111332 112321 1 rlpA endolytic peptidoglycan transglycosylase RlpA Morganella morganii S5
5 group_1558 F4V73_RS00245 60063 61091 -1 rlpA endolytic peptidoglycan transglycosylase RlpA Morganella psychrotolerans
6 group_1558 PMI_RS02090 491267 492280 -1 rlpA endolytic peptidoglycan transglycosylase RlpA Proteus mirabilis HI4320