PF03129


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF03129, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 21 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF03129
Description Anticodon binding domain

Occurence in the database

PF03129 is associated with 21 different proteins (see tab "Protein list" and "Profile")
The 21 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_60 FBDBKF_01050 190560 191840 -1 hisS histidine--tRNA ligase Morganella morganii S1
1 group_1045 FBDBKF_05910 4983 6704 1 proS proline--tRNA ligase Morganella morganii S1
2 group_1811 FBDBKF_13430 62469 64400 -1 thrS threonine--tRNA ligase Morganella morganii S1
3 group_60 EHELCC_00495 117028 118308 1 hisS histidine--tRNA ligase Morganella morganii S2
4 group_1811 EHELCC_08665 210791 212722 1 thrS threonine--tRNA ligase Morganella morganii S2
5 group_1045 EHELCC_08955 5555 7276 1 proS proline--tRNA ligase Morganella morganii S2
6 group_60 NLDBIP_02965 561828 563108 -1 hisS histidine--tRNA ligase Morganella morganii S4
7 group_1811 NLDBIP_08990 210791 212722 1 thrS threonine--tRNA ligase Morganella morganii S4
8 group_1045 NLDBIP_09335 5555 7276 1 proS proline--tRNA ligase Morganella morganii S4
9 group_60 LHKJJB_04480 169069 170349 -1 hisS histidine--tRNA ligase Morganella morganii S3
10 group_1811 LHKJJB_05275 44437 46368 -1 thrS threonine--tRNA ligase Morganella morganii S3
11 group_1045 LHKJJB_08420 209962 211683 -1 proS proline--tRNA ligase Morganella morganii S3
12 group_60 HKOGLL_02565 117233 118513 1 hisS histidine--tRNA ligase Morganella morganii S5
13 group_1811 HKOGLL_05640 195382 197313 1 thrS threonine--tRNA ligase Morganella morganii S5
14 group_1045 HKOGLL_07970 209962 211683 -1 proS proline--tRNA ligase Morganella morganii S5
15 group_1811 F4V73_RS03335 711415 713343 1 thrS threonine--tRNA ligase Morganella psychrotolerans
16 group_60 F4V73_RS07125 1479013 1480290 -1 hisS histidine--tRNA ligase Morganella psychrotolerans
17 group_1045 F4V73_RS15985 206750 208471 -1 proS proline--tRNA ligase Morganella psychrotolerans
18 group_1811 PMI_RS05025 1098276 1100204 1 thrS threonine--tRNA ligase Proteus mirabilis HI4320
19 group_60 PMI_RS09100 1981171 1982454 -1 hisS histidine--tRNA ligase Proteus mirabilis HI4320
20 group_1045 PMI_RS11180 2459222 2460937 1 proS proline--tRNA ligase Proteus mirabilis HI4320