Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02852, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 28 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link | PF02852 |
---|---|
Description | Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain |
Occurence in the database
PF02852 is associated with 28 different proteins (see tab "Protein list" and "Profile") |
The 28 proteins are classified into 4 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_838 | FBDBKF_04225 | 30969 | 32396 | -1 | lpdA | dihydrolipoyl dehydrogenase | Morganella morganii S1 |
1 | group_1710 | FBDBKF_11930 | 34077 | 35429 | -1 | gorA | glutathione-disulfide reductase | Morganella morganii S1 |
2 | group_1742 | FBDBKF_12145 | 84046 | 85446 | 1 | sthA | Si-specific NAD(P)(+) transhydrogenase | Morganella morganii S1 |
3 | group_2091 | FBDBKF_15710 | 75773 | 77419 | -1 | merA | mercury(II) reductase | Morganella morganii S1 |
4 | group_2091 | FBDBKF_20225 | 2770 | 3312 | -1 | merA | MerA | Morganella morganii S1 |
5 | group_838 | EHELCC_05515 | 90426 | 91853 | -1 | lpdA | dihydrolipoyl dehydrogenase | Morganella morganii S2 |
6 | group_1742 | EHELCC_14160 | 49259 | 50659 | -1 | sthA | Si-specific NAD(P)(+) transhydrogenase | Morganella morganii S2 |
7 | group_1710 | EHELCC_14375 | 99276 | 100628 | 1 | gorA | glutathione-disulfide reductase | Morganella morganii S2 |
8 | group_2091 | EHELCC_16065 | 75073 | 76719 | -1 | merA | mercury(II) reductase | Morganella morganii S2 |
9 | group_2091 | EHELCC_19590 | 2770 | 3312 | -1 | merA | MerA | Morganella morganii S2 |
10 | group_838 | NLDBIP_05835 | 131491 | 132918 | -1 | lpdA | dihydrolipoyl dehydrogenase | Morganella morganii S4 |
11 | group_1742 | NLDBIP_15255 | 53196 | 54596 | -1 | sthA | Si-specific NAD(P)(+) transhydrogenase | Morganella morganii S4 |
12 | group_1710 | NLDBIP_15470 | 103213 | 104565 | 1 | gorA | glutathione-disulfide reductase | Morganella morganii S4 |
13 | group_2091 | NLDBIP_16300 | 3944 | 5590 | 1 | merA | mercury(II) reductase | Morganella morganii S4 |
14 | group_838 | LHKJJB_02715 | 109015 | 110442 | -1 | lpdA | dihydrolipoyl dehydrogenase | Morganella morganii S3 |
15 | group_1710 | LHKJJB_15140 | 34077 | 35429 | -1 | gorA | glutathione-disulfide reductase | Morganella morganii S3 |
16 | group_1742 | LHKJJB_15355 | 84046 | 85446 | 1 | sthA | Si-specific NAD(P)(+) transhydrogenase | Morganella morganii S3 |
17 | group_2091 | LHKJJB_16500 | 75073 | 76719 | -1 | merA | mercury(II) reductase | Morganella morganii S3 |
18 | group_838 | HKOGLL_06190 | 30879 | 32306 | -1 | lpdA | dihydrolipoyl dehydrogenase | Morganella morganii S5 |
19 | group_1710 | HKOGLL_14260 | 20740 | 22092 | -1 | gorA | glutathione-disulfide reductase | Morganella morganii S5 |
20 | group_1742 | HKOGLL_14475 | 70709 | 72109 | 1 | sthA | Si-specific NAD(P)(+) transhydrogenase | Morganella morganii S5 |
21 | group_2091 | HKOGLL_16270 | 75073 | 76719 | -1 | merA | mercury(II) reductase | Morganella morganii S5 |
22 | group_838 | F4V73_RS08675 | 1792037 | 1793464 | -1 | lpdA | dihydrolipoyl dehydrogenase | Morganella psychrotolerans |
23 | group_1710 | F4V73_RS14735 | 182346 | 183698 | 1 | gorA | glutathione-disulfide reductase | Morganella psychrotolerans |
24 | group_1742 | F4V73_RS16940 | 9302 | 10702 | 1 | sthA | Si-specific NAD(P)(+) transhydrogenase | Morganella psychrotolerans |
25 | group_838 | PMI_RS10075 | 2199158 | 2200585 | -1 | lpdA | dihydrolipoyl dehydrogenase | Proteus mirabilis HI4320 |
26 | group_1710 | PMI_RS14005 | 3109392 | 3110744 | -1 | gorA | glutathione-disulfide reductase | Proteus mirabilis HI4320 |
27 | group_1742 | PMI_RS16030 | 3562641 | 3564038 | -1 | sthA | Si-specific NAD(P)(+) transhydrogenase | Proteus mirabilis HI4320 |