PF02787


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02787, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02787
Description Carbamoyl-phosphate synthetase large chain, oligomerisation domain

Occurence in the database

PF02787 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1124 FBDBKF_06420 119642 122869 -1 carB carbamoyl-phosphate synthase large subunit Morganella morganii S1
1 group_1124 EHELCC_09465 120214 123441 -1 carB carbamoyl-phosphate synthase large subunit Morganella morganii S2
2 group_1124 NLDBIP_09845 120214 123441 -1 carB carbamoyl-phosphate synthase large subunit Morganella morganii S4
3 group_1124 LHKJJB_07910 93797 97024 1 carB carbamoyl-phosphate synthase large subunit Morganella morganii S3
4 group_1124 HKOGLL_07460 93797 97024 1 carB carbamoyl-phosphate synthase large subunit Morganella morganii S5
5 group_1124 F4V73_RS15505 90926 94153 1 carB carbamoyl-phosphate synthase large subunit Morganella psychrotolerans
6 group_1124 PMI_RS00105 33316 36543 1 carB carbamoyl-phosphate synthase large subunit Proteus mirabilis HI4320