PF02664


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02664, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02664
Description S-Ribosylhomocysteinase (LuxS)

Occurence in the database

PF02664 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2037 FBDBKF_15285 65876 66391 1 luxS S-ribosylhomocysteine lyase Morganella morganii S1
1 group_2037 EHELCC_10960 18515 19030 -1 luxS S-ribosylhomocysteine lyase Morganella morganii S2
2 group_2037 NLDBIP_11305 18515 19030 -1 luxS S-ribosylhomocysteine lyase Morganella morganii S4
3 group_2037 LHKJJB_11165 18515 19030 -1 luxS S-ribosylhomocysteine lyase Morganella morganii S3
4 group_2037 HKOGLL_09775 18515 19030 -1 luxS S-ribosylhomocysteine lyase Morganella morganii S5
5 group_2037 F4V73_RS12165 17842 18357 -1 luxS S-ribosylhomocysteine lyase Morganella psychrotolerans
6 group_2037 PMI_RS01840 433589 434104 1 luxS S-ribosylhomocysteine lyase Proteus mirabilis HI4320