PF02617


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02617, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02617
Description ATP-dependent Clp protease adaptor protein ClpS

Occurence in the database

PF02617 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1213 FBDBKF_07060 76105 76425 1 clpS ATP-dependent Clp protease adapter ClpS Morganella morganii S1
1 group_1213 EHELCC_03910 109761 110081 -1 clpS ATP-dependent Clp protease adapter ClpS Morganella morganii S2
2 group_1213 NLDBIP_03910 109557 109877 -1 clpS ATP-dependent Clp protease adapter ClpS Morganella morganii S4
3 group_1213 LHKJJB_09740 109671 109991 -1 clpS ATP-dependent Clp protease adapter ClpS Morganella morganii S3
4 group_1213 HKOGLL_09235 81061 81381 1 clpS ATP-dependent Clp protease adapter ClpS Morganella morganii S5
5 group_1213 F4V73_RS01245 263887 264207 1 clpS ATP-dependent Clp protease adapter ClpS Morganella psychrotolerans
6 group_1213 PMI_RS03390 748838 749152 1 clpS ATP-dependent Clp protease adapter ClpS Proteus mirabilis HI4320