PF02600


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02600, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 12 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02600
Description Disulfide bond formation protein DsbB

Occurence in the database

PF02600 is associated with 12 different proteins (see tab "Protein list" and "Profile")
The 12 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_86 FBDBKF_05485 108320 108850 1 dsbB disulfide bond formation protein DsbB Morganella morganii S1
1 group_86 FBDBKF_19840 12117 12653 -1 dsbB disulfide bond formation protein DsbB Morganella morganii S1
2 group_86 EHELCC_10565 158811 159347 -1 dsbB disulfide bond formation protein DsbB Morganella morganii S2
3 group_86 EHELCC_12105 72644 73174 -1 dsbB disulfide bond formation protein DsbB Morganella morganii S2
4 group_86 NLDBIP_10910 137082 137618 -1 dsbB disulfide bond formation protein DsbB Morganella morganii S4
5 group_86 NLDBIP_12445 72599 73129 -1 dsbB disulfide bond formation protein DsbB Morganella morganii S4
6 group_86 LHKJJB_10445 53910 54446 1 dsbB disulfide bond formation protein DsbB Morganella morganii S3
7 group_86 LHKJJB_12305 72644 73174 -1 dsbB disulfide bond formation protein DsbB Morganella morganii S3
8 group_86 HKOGLL_10920 72644 73174 -1 dsbB disulfide bond formation protein DsbB Morganella morganii S5
9 group_86 HKOGLL_16610 53919 54455 1 dsbB disulfide bond formation protein DsbB Morganella morganii S5
10 group_86 F4V73_RS03815 806817 807350 -1 dsbB disulfide bond formation protein DsbB Morganella psychrotolerans
11 group_86 PMI_RS07330 1606876 1607400 1 dsbB disulfide bond formation protein DsbB Proteus mirabilis HI4320