PF02540


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02540, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02540
Description NAD synthase

Occurence in the database

PF02540 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_533 FBDBKF_01180 219201 220823 -1 nadE NAD+ synthase Morganella morganii S1
1 group_2231 FBDBKF_17100 3182 4759 -1 guaA glutamine-hydrolyzing GMP synthase Morganella morganii S1
2 group_533 EHELCC_00365 88045 89667 1 nadE NAD+ synthase Morganella morganii S2
3 group_2231 EHELCC_01790 350742 352319 1 guaA glutamine-hydrolyzing GMP synthase Morganella morganii S2
4 group_2231 NLDBIP_01670 327817 329394 -1 guaA glutamine-hydrolyzing GMP synthase Morganella morganii S4
5 group_533 NLDBIP_03095 590469 592091 -1 nadE NAD+ synthase Morganella morganii S4
6 group_2231 LHKJJB_00365 63291 64868 1 guaA glutamine-hydrolyzing GMP synthase Morganella morganii S3
7 group_533 LHKJJB_04610 197710 199332 -1 nadE NAD+ synthase Morganella morganii S3
8 group_2231 HKOGLL_00405 68802 70379 1 guaA glutamine-hydrolyzing GMP synthase Morganella morganii S5
9 group_533 HKOGLL_02435 88250 89872 1 nadE NAD+ synthase Morganella morganii S5
10 group_533 F4V73_RS07250 1507950 1509572 -1 NAD+ synthase Morganella psychrotolerans
11 group_2231 PMI_RS07520 1638027 1639604 -1 guaA glutamine-hydrolyzing GMP synthase Proteus mirabilis HI4320
12 group_533 PMI_RS09235 2012186 2013802 -1 NAD+ synthase Proteus mirabilis HI4320