Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02492, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 21 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link | PF02492 |
---|---|
Description | CobW/HypB/UreG, nucleotide-binding domain |
Occurence in the database
PF02492 is associated with 21 different proteins (see tab "Protein list" and "Profile") |
The 21 proteins are classified into 3 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_1158 | FBDBKF_06640 | 169169 | 169804 | -1 | ureG | urease accessory protein UreG | Morganella morganii S1 |
1 | group_1290 | FBDBKF_07850 | 97328 | 98287 | 1 | yjiA | GTPase | Morganella morganii S1 |
2 | group_2276 | FBDBKF_17495 | 33219 | 34322 | -1 | hypB | hydrogenase nickel incorporation protein HypB | Morganella morganii S1 |
3 | group_1158 | EHELCC_09685 | 169741 | 170376 | -1 | ureG | urease accessory protein UreG | Morganella morganii S2 |
4 | group_1290 | EHELCC_13680 | 71522 | 72481 | 1 | yjiA | GTPase | Morganella morganii S2 |
5 | group_2276 | EHELCC_17390 | 33219 | 34322 | -1 | hypB | hydrogenase nickel incorporation protein HypB | Morganella morganii S2 |
6 | group_1158 | NLDBIP_10065 | 169741 | 170376 | -1 | ureG | urease accessory protein UreG | Morganella morganii S4 |
7 | group_1290 | NLDBIP_14125 | 92397 | 93356 | 1 | yjiA | GTPase | Morganella morganii S4 |
8 | group_2276 | NLDBIP_17805 | 8474 | 9577 | 1 | hypB | hydrogenase nickel incorporation protein HypB | Morganella morganii S4 |
9 | group_1158 | LHKJJB_07690 | 46862 | 47497 | 1 | ureG | urease accessory protein UreG | Morganella morganii S3 |
10 | group_1290 | LHKJJB_08725 | 66393 | 67352 | -1 | yjiA | GTPase | Morganella morganii S3 |
11 | group_2276 | LHKJJB_17725 | 8472 | 9575 | 1 | hypB | hydrogenase nickel incorporation protein HypB | Morganella morganii S3 |
12 | group_1158 | HKOGLL_07240 | 46862 | 47497 | 1 | ureG | urease accessory protein UreG | Morganella morganii S5 |
13 | group_1290 | HKOGLL_08275 | 66393 | 67352 | -1 | yjiA | GTPase | Morganella morganii S5 |
14 | group_2276 | HKOGLL_17735 | 8472 | 9575 | 1 | hypB | hydrogenase nickel incorporation protein HypB | Morganella morganii S5 |
15 | group_1290 | F4V73_RS13190 | 257321 | 258280 | -1 | yjiA | GTPase | Morganella psychrotolerans |
16 | group_1158 | F4V73_RS15295 | 44517 | 45155 | 1 | ureG | urease accessory protein UreG | Morganella psychrotolerans |
17 | group_2276 | F4V73_RS16670 | 157127 | 158248 | -1 | hypB | hydrogenase nickel incorporation protein HypB | Morganella psychrotolerans |
18 | group_2276 | PMI_RS00180 | 59419 | 60615 | 1 | hypB | hydrogenase nickel incorporation protein HypB | Proteus mirabilis HI4320 |
19 | group_1290 | PMI_RS00695 | 178444 | 179421 | 1 | yjiA | GTPase | Proteus mirabilis HI4320 |
20 | group_1158 | PMI_RS18350 | 4028297 | 4028914 | 1 | ureG | urease accessory protein UreG | Proteus mirabilis HI4320 |