PF02357


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02357, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02357
Description Transcription termination factor nusG

Occurence in the database

PF02357 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2211 FBDBKF_16910 11109 11600 1 rfaH transcription/translation regulatory transformer protein RfaH Morganella morganii S1
1 group_2284 FBDBKF_17550 1412 1957 1 nusG transcription termination/antitermination protein NusG Morganella morganii S1
2 group_2284 EHELCC_18035 788 1333 1 nusG transcription termination/antitermination protein NusG Morganella morganii S2
3 group_2211 EHELCC_19520 92 349 -1 hypothetical protein Morganella morganii S2
4 group_2211 NLDBIP_16890 56910 57401 -1 rfaH transcription/translation regulatory transformer protein RfaH Morganella morganii S4
5 group_2284 NLDBIP_18115 37404 37949 -1 nusG transcription termination/antitermination protein NusG Morganella morganii S4
6 group_2211 LHKJJB_16580 11109 11600 1 rfaH transcription/translation regulatory transformer protein RfaH Morganella morganii S3
7 group_2284 LHKJJB_18310 37404 37949 -1 nusG transcription termination/antitermination protein NusG Morganella morganii S3
8 group_2211 HKOGLL_17545 11109 11600 1 rfaH transcription/translation regulatory transformer protein RfaH Morganella morganii S5
9 group_2284 HKOGLL_17890 788 1333 1 nusG transcription termination/antitermination protein NusG Morganella morganii S5
10 group_2284 F4V73_RS14935 219966 220511 1 nusG transcription termination/antitermination protein NusG Morganella psychrotolerans
11 group_2211 F4V73_RS18380 11226 11717 1 rfaH transcription/translation regulatory transformer protein RfaH Morganella psychrotolerans
12 group_2284 PMI_RS13780 3064729 3065274 -1 nusG transcription termination/antitermination protein NusG Proteus mirabilis HI4320
13 group_2211 PMI_RS17605 3863089 3863589 -1 rfaH transcription/translation regulatory transformer protein RfaH Proteus mirabilis HI4320