PF02133


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02133, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 18 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02133
Description Permease for cytosine/purines, uracil, thiamine, allantoin

Occurence in the database

PF02133 is associated with 18 different proteins (see tab "Protein list" and "Profile")
The 18 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1172 FBDBKF_06750 14193 15440 1 codB cytosine permease Morganella morganii S1
1 group_3291 FBDBKF_09180 65357 66757 1 codB Purine-cytosine permease or related protein Morganella morganii S1
2 group_3060 FBDBKF_18310 25795 27201 -1 codB Purine-cytosine permease or related protein Morganella morganii S1
3 group_1172 EHELCC_04220 170746 171993 -1 codB cytosine permease Morganella morganii S2
4 group_3291 EHELCC_10230 79347 80747 -1 codB Purine-cytosine permease or related protein Morganella morganii S2
5 group_3060 EHELCC_18345 25668 27074 -1 codB Purine-cytosine permease or related protein Morganella morganii S2
6 group_1172 NLDBIP_04220 170542 171789 -1 codB cytosine permease Morganella morganii S4
7 group_3291 NLDBIP_10575 57618 59018 -1 codB Purine-cytosine permease or related protein Morganella morganii S4
8 group_3060 NLDBIP_18270 25869 27275 -1 codB Purine-cytosine permease or related protein Morganella morganii S4
9 group_1172 LHKJJB_10050 170656 171903 -1 codB cytosine permease Morganella morganii S3
10 group_3291 LHKJJB_10780 132510 133910 1 codB Purine-cytosine permease or related protein Morganella morganii S3
11 group_3060 LHKJJB_18465 25707 27113 -1 codB Purine-cytosine permease or related protein Morganella morganii S3
12 group_1172 HKOGLL_08925 19149 20396 1 codB cytosine permease Morganella morganii S5
13 group_3291 HKOGLL_13840 65811 67211 1 codB Purine-cytosine permease or related protein Morganella morganii S5
14 group_3060 HKOGLL_18200 25685 27091 -1 codB Purine-cytosine permease or related protein Morganella morganii S5
15 group_1172 F4V73_RS00900 190792 192039 1 codB cytosine permease Morganella psychrotolerans
16 group_3060 F4V73_RS01820 398917 400326 -1 cytosine permease Morganella psychrotolerans
17 group_1172 PMI_RS07055 1538040 1539290 -1 codB cytosine permease Proteus mirabilis HI4320