PF02080


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02080, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 15 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02080
Description TrkA-C domain

Occurence in the database

PF02080 is associated with 15 different proteins (see tab "Protein list" and "Profile")
The 15 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1902 FBDBKF_14185 33908 35737 -1 citT Di- and tricarboxylate antiporter Morganella morganii S1
1 group_2369 FBDBKF_19095 7057 8433 1 trkA Trk system potassium transporter TrkA Morganella morganii S1
2 group_1902 EHELCC_08095 81248 83077 1 citT Di- and tricarboxylate antiporter Morganella morganii S2
3 group_2369 EHELCC_18840 7057 8433 1 trkA Trk system potassium transporter TrkA Morganella morganii S2
4 group_1902 NLDBIP_08420 81248 83077 1 citT Di- and tricarboxylate antiporter Morganella morganii S4
5 group_2369 NLDBIP_18855 7057 8433 1 trkA Trk system potassium transporter TrkA Morganella morganii S4
6 group_1902 LHKJJB_05845 174082 175911 -1 citT Di- and tricarboxylate antiporter Morganella morganii S3
7 group_2369 LHKJJB_18710 7057 8433 1 trkA Trk system potassium transporter TrkA Morganella morganii S3
8 group_1902 HKOGLL_05070 65839 67668 1 citT Di- and tricarboxylate antiporter Morganella morganii S5
9 group_2369 HKOGLL_18445 7057 8433 1 trkA Trk system potassium transporter TrkA Morganella morganii S5
10 group_1902 F4V73_RS02745 578109 579938 1 SLC13 family permease Morganella psychrotolerans
11 group_2369 F4V73_RS19070 21964 23340 -1 trkA Trk system potassium transporter TrkA Morganella psychrotolerans
12 group_1902 PMI_RS08665 1893195 1895024 -1 SLC13 family permease Proteus mirabilis HI4320
13 group_4634 PMI_RS14090 3128007 3129665 1 putative transporter Proteus mirabilis HI4320
14 group_2369 PMI_RS16295 3597523 3598899 -1 trkA Trk system potassium transporter TrkA Proteus mirabilis HI4320