PF01848


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01848, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 5 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01848
Description Hok/gef family

Occurence in the database

PF01848 is associated with 5 different proteins (see tab "Protein list" and "Profile")
The 5 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3649 PMI_RS18780 37025 37168 1 Hok/Gef family protein Proteus mirabilis HI4320
1 group_3649 PMI_RS19000 1901076 1901219 1 Hok/Gef family protein Proteus mirabilis HI4320
2 group_3649 PMI_RS19005 1901617 1901760 1 Hok/Gef family protein Proteus mirabilis HI4320
3 group_3649 PMI_RS19010 1902157 1902300 1 Hok/Gef family protein Proteus mirabilis HI4320
4 group_3649 PMI_RS19185 22605 22751 -1 Hok/Gef family protein Proteus mirabilis HI4320