Orthogroup:group_3644


Homologs in group_3644

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5 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
F4V73_RS00090 F4V73_RS00090 Morganella psychrotolerans tssC type VI secretion system contractile sheath large subunit
F4V73_RS07015 F4V73_RS07015 Morganella psychrotolerans - type VI secretion system contractile sheath large subunit
F4V73_RS07020 F4V73_RS07020 Morganella psychrotolerans tssC type VI secretion system contractile sheath large subunit
F4V73_RS09360 F4V73_RS09360 Morganella psychrotolerans tssC type VI secretion system contractile sheath large subunit
F4V73_RS16865 F4V73_RS16865 Morganella psychrotolerans tssC type VI secretion system contractile sheath large subunit

Distribution of group_3644 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_3644 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3644

Orthogroup content: 5 members

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This page summarizes the annotation of all members of the orthologous group group_3644.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 tssC 4
2 - 1

Product

# Product Occurence
1 type VI secretion system contractile sheath large subunit 5

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3517 5 U Intracellular trafficking, secretion, and vesicular transport (U) Predicted component TssB of the type VI protein secretion system, VipA/VipB/TssB family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K11900 4 type VI secretion system protein ImpC Biofilm formation - Pseudomonas aeruginosa -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF05943 5 EvpB/VC_A0108, tail sheath N-terminal domain
PF18945 5 EvpB/VC_A0108, tail sheath gpW/gp25-like domain

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG035102 1 type VI secretion system contractile sheath large subunit VF1120 Effector delivery system
VFG041073 1 type VI secretion system contractile sheath large subunit VF1036 Effector delivery system
VFG041203 1 type VI secretion system contractile sheath large subunit VF1263 Effector delivery system

Annotations of the 1 SwissProt hits

Annotation Number of occurrences
Type VI secretion system sheath protein TssC1 1

Protein length

Min length 442
Max length 516
Mean length (sd) 491.2 (28.7)
Median length 501.0

Protein length distribution