PF01817


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01817, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01817
Description Chorismate mutase type II

Occurence in the database

PF01817 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2045 FBDBKF_15330 73854 74975 1 tyrA bifunctional chorismate mutase/prephenate dehydrogenase Morganella morganii S1
1 group_2047 FBDBKF_15345 77027 78178 -1 pheA bifunctional chorismate mutase/prephenate dehydratase Morganella morganii S1
2 group_2047 EHELCC_10900 6728 7879 1 pheA bifunctional chorismate mutase/prephenate dehydratase Morganella morganii S2
3 group_2045 EHELCC_10915 9931 11052 -1 tyrA bifunctional chorismate mutase/prephenate dehydrogenase Morganella morganii S2
4 group_2047 NLDBIP_11245 6728 7879 1 pheA bifunctional chorismate mutase/prephenate dehydratase Morganella morganii S4
5 group_2045 NLDBIP_11260 9931 11052 -1 tyrA bifunctional chorismate mutase/prephenate dehydrogenase Morganella morganii S4
6 group_2047 LHKJJB_11105 6728 7879 1 pheA bifunctional chorismate mutase/prephenate dehydratase Morganella morganii S3
7 group_2045 LHKJJB_11120 9931 11052 -1 tyrA bifunctional chorismate mutase/prephenate dehydrogenase Morganella morganii S3
8 group_2047 HKOGLL_09715 6728 7879 1 pheA bifunctional chorismate mutase/prephenate dehydratase Morganella morganii S5
9 group_2045 HKOGLL_09730 9931 11052 -1 tyrA bifunctional chorismate mutase/prephenate dehydrogenase Morganella morganii S5
10 group_2047 F4V73_RS12110 6800 7951 1 pheA bifunctional chorismate mutase/prephenate dehydratase Morganella psychrotolerans
11 group_2045 F4V73_RS12120 9144 10265 -1 tyrA bifunctional chorismate mutase/prephenate dehydrogenase Morganella psychrotolerans
12 group_2045 PMI_RS01885 441609 442733 1 tyrA bifunctional chorismate mutase/prephenate dehydrogenase Proteus mirabilis HI4320
13 group_2047 PMI_RS01895 445018 446175 -1 pheA bifunctional chorismate mutase/prephenate dehydratase Proteus mirabilis HI4320