Orthogroup:group_2087


Homologs in group_2087

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_15605 FBDBKF_15605 Morganella morganii S1 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE
EHELCC_15965 EHELCC_15965 Morganella morganii S2 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE
NLDBIP_16405 NLDBIP_16405 Morganella morganii S4 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE
LHKJJB_16400 LHKJJB_16400 Morganella morganii S3 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE
HKOGLL_16170 HKOGLL_16170 Morganella morganii S5 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE
F4V73_RS17550 F4V73_RS17550 Morganella psychrotolerans mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE
PMI_RS15480 PMI_RS15480 Proteus mirabilis HI4320 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE

Distribution of group_2087 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2087 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2087

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2087.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 mnmE 7

Product

# Product Occurence
1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0486 7 J Translation, ribosomal structure and biogenesis (J) tRNA U34 5-carboxymethylaminomethyl modifying GTPase MnmE/TrmE

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03650 7 tRNA modification GTPase [EC:3.6.-.-] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01926 7 50S ribosome-binding GTPase
PF10396 7 GTP-binding protein TrmE N-terminus
PF12631 7 MnmE helical domain

Annotations of the 516 SwissProt hits

Annotation Number of occurrences
tRNA modification GTPase MnmE 514
tRNA modification GTPase gtpbp3, mitochondrial 1
tRNA modification GTPase mss1, mitochondrial 1

Protein length

Min length 454
Max length 461
Mean length (sd) 459.0 (3.4)
Median length 461.0

Protein length distribution