PF01783


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01783, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01783
Description Ribosomal L32p protein family

Occurence in the database

PF01783 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1964 FBDBKF_14735 44490 44660 -1 rpmF 50S ribosomal protein L32 Morganella morganii S1
1 group_1964 EHELCC_15540 74566 74736 -1 rpmF 50S ribosomal protein L32 Morganella morganii S2
2 group_1964 NLDBIP_16070 74566 74736 -1 rpmF 50S ribosomal protein L32 Morganella morganii S4
3 group_1964 LHKJJB_15770 41950 42120 1 rpmF 50S ribosomal protein L32 Morganella morganii S3
4 group_1964 HKOGLL_14890 41162 41332 1 rpmF 50S ribosomal protein L32 Morganella morganii S5
5 group_1964 F4V73_RS07530 1573223 1573393 -1 rpmF 50S ribosomal protein L32 Morganella psychrotolerans
6 group_1964 PMI_RS04205 948022 948192 1 rpmF 50S ribosomal protein L32 Proteus mirabilis HI4320