Orthogroup:group_2001


Homologs in group_2001

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_15050 FBDBKF_15050 Morganella morganii S1 ruvX Holliday junction resolvase RuvX
EHELCC_11195 EHELCC_11195 Morganella morganii S2 ruvX Holliday junction resolvase RuvX
NLDBIP_11540 NLDBIP_11540 Morganella morganii S4 ruvX Holliday junction resolvase RuvX
LHKJJB_11400 LHKJJB_11400 Morganella morganii S3 ruvX Holliday junction resolvase RuvX
HKOGLL_10010 HKOGLL_10010 Morganella morganii S5 ruvX Holliday junction resolvase RuvX
F4V73_RS12400 F4V73_RS12400 Morganella psychrotolerans ruvX Holliday junction resolvase RuvX
PMI_RS01615 PMI_RS01615 Proteus mirabilis HI4320 ruvX Holliday junction resolvase RuvX

Distribution of group_2001 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2001 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2001

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2001.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 ruvX 7

Product

# Product Occurence
1 Holliday junction resolvase RuvX 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0816 7 JLK Translation, ribosomal structure and biogenesis (J)
Replication, recombination and repair (L)
Transcription (K)		 YqgF/RuvX protein, pre-16S rRNA maturation RNase/Holliday junction resolvase/anti-termination factor

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K07447 7 putative pre-16S rRNA nuclease [EC:3.1.-.-] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF03652 7 Holliday junction resolvase

Annotations of the 525 SwissProt hits

Annotation Number of occurrences
Putative pre-16S rRNA nuclease 525

Protein length

Min length 139
Max length 141
Mean length (sd) 140.0 (0.6)
Median length 140.0

Protein length distribution