PF01743


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01743, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01743
Description Poly A polymerase head domain

Occurence in the database

PF01743 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1120 FBDBKF_06385 112100 113281 1 pcnB multifunctional CCA addition/repair protein Morganella morganii S1
1 group_1308 FBDBKF_08010 133974 135329 -1 pcnB polynucleotide adenylyltransferase PcnB Morganella morganii S1
2 group_1120 EHELCC_09430 112672 113853 1 pcnB multifunctional CCA addition/repair protein Morganella morganii S2
3 group_1308 EHELCC_13840 108168 109523 -1 pcnB polynucleotide adenylyltransferase PcnB Morganella morganii S2
4 group_1120 NLDBIP_09810 112672 113853 1 pcnB multifunctional CCA addition/repair protein Morganella morganii S4
5 group_1308 NLDBIP_14285 129043 130398 -1 pcnB polynucleotide adenylyltransferase PcnB Morganella morganii S4
6 group_1120 LHKJJB_07945 103385 104566 -1 pcnB multifunctional CCA addition/repair protein Morganella morganii S3
7 group_1308 LHKJJB_08565 29351 30706 1 pcnB polynucleotide adenylyltransferase PcnB Morganella morganii S3
8 group_1120 HKOGLL_07495 103385 104566 -1 pcnB multifunctional CCA addition/repair protein Morganella morganii S5
9 group_1308 HKOGLL_08115 29351 30706 1 pcnB polynucleotide adenylyltransferase PcnB Morganella morganii S5
10 group_1308 F4V73_RS12975 207598 209100 1 pcnB polynucleotide adenylyltransferase PcnB Morganella psychrotolerans
11 group_1120 F4V73_RS15540 100778 101953 -1 multifunctional CCA addition/repair protein Morganella psychrotolerans
12 group_1308 PMI_RS00955 234027 235550 -1 pcnB polynucleotide adenylyltransferase PcnB Proteus mirabilis HI4320
13 group_1120 PMI_RS11680 2582259 2583482 1 multifunctional CCA addition/repair protein Proteus mirabilis HI4320