Orthogroup:group_1365


Homologs in group_1365

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08455 FBDBKF_08455 Morganella morganii S1 hfq RNA chaperone Hfq
EHELCC_13070 EHELCC_13070 Morganella morganii S2 hfq RNA chaperone Hfq
NLDBIP_13410 NLDBIP_13410 Morganella morganii S4 hfq RNA chaperone Hfq
LHKJJB_13145 LHKJJB_13145 Morganella morganii S3 hfq RNA chaperone Hfq
HKOGLL_11885 HKOGLL_11885 Morganella morganii S5 hfq RNA chaperone Hfq
F4V73_RS09675 F4V73_RS09675 Morganella psychrotolerans hfq RNA chaperone Hfq
PMI_RS16750 PMI_RS16750 Proteus mirabilis HI4320 hfq RNA chaperone Hfq

Distribution of group_1365 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1365 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1365

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1365.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 hfq 7

Product

# Product Occurence
1 RNA chaperone Hfq 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1923 7 T Signal transduction mechanisms (T) sRNA-binding regulator protein Hfq

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03666 7 host factor-I protein Quorum sensing
RNA degradation
Biofilm formation - Vibrio cholerae		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF17209 7 Hfq protein

Annotations of the 384 SwissProt hits

Annotation Number of occurrences
RNA-binding protein Hfq 384

Protein length

Min length 96
Max length 102
Mean length (sd) 100.4 (2.0)
Median length 101.0

Protein length distribution