PF01713


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01713, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01713
Description Smr domain

Occurence in the database

PF01713 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1929 FBDBKF_14350 70020 70565 1 smrB endonuclease SmrB Morganella morganii S1
1 group_1929 EHELCC_07930 46420 46965 -1 smrB endonuclease SmrB Morganella morganii S2
2 group_1929 NLDBIP_08255 46420 46965 -1 smrB endonuclease SmrB Morganella morganii S4
3 group_1929 LHKJJB_06010 210194 210739 1 smrB endonuclease SmrB Morganella morganii S3
4 group_1929 HKOGLL_04905 31011 31556 -1 smrB endonuclease SmrB Morganella morganii S5
5 group_1929 F4V73_RS02555 540020 540565 -1 smrB endonuclease SmrB Morganella psychrotolerans
6 group_1929 PMI_RS08850 1935139 1935681 1 smrB endonuclease SmrB Proteus mirabilis HI4320