Orthogroup:group_1967



Homologs in group_1967

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_14755 FBDBKF_14755 Morganella morganii S1 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC
EHELCC_15560 EHELCC_15560 Morganella morganii S2 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC
NLDBIP_16090 NLDBIP_16090 Morganella morganii S4 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC
LHKJJB_15750 LHKJJB_15750 Morganella morganii S3 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC
HKOGLL_14870 HKOGLL_14870 Morganella morganii S5 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC
F4V73_RS07550 F4V73_RS07550 Morganella psychrotolerans rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC
PMI_RS04185 PMI_RS04185 Proteus mirabilis HI4320 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC

Distribution of group_1967 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1967 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1967

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1967.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rluC 7

Product

# Product Occurence
1 23S rRNA pseudouridine(955/2504/2580) synthase RluC 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0564 7 J Translation, ribosomal structure and biogenesis (J) Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K06179 7 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00849 7 RNA pseudouridylate synthase
PF01479 7 S4 domain

Annotations of the 133 SwissProt hits

Annotation Number of occurrences
21S rRNA pseudouridine(2819) synthase 1
Bifunctional protein RIB2 1
Dual-specificity RNA pseudouridine synthase RluA 13
MATH and LRR domain-containing protein PFE0570w 1
Pseudouridylate synthase C18B11.02c 1
Pseudouridylate synthase RPUSD2 2
Pseudouridylate synthase RPUSD4, mitochondrial 6
RNA pseudouridine synthase 1 2
RNA pseudouridine synthase 2, chloroplastic 2
RNA pseudouridine synthase 3, mitochondrial 2
RNA pseudouridine synthase 4, mitochondrial 2
RNA pseudouridine synthase 5 2
RNA pseudouridine synthase 6, chloroplastic 1
RNA pseudouridine synthase 7 2
RNA pseudouridylate synthase domain-containing protein 1 4
Ribosomal large subunit pseudouridine synthase C 22
Ribosomal large subunit pseudouridine synthase D 28
Uncharacterized RNA pseudouridine synthase Caur_0901 1
Uncharacterized RNA pseudouridine synthase Cpar_0723 1
Uncharacterized RNA pseudouridine synthase HI_0042 1
Uncharacterized RNA pseudouridine synthase HP_0347 1
Uncharacterized RNA pseudouridine synthase HP_0745 1
Uncharacterized RNA pseudouridine synthase HP_0956 1
Uncharacterized RNA pseudouridine synthase MCAP_0714 1
Uncharacterized RNA pseudouridine synthase MG209 1
Uncharacterized RNA pseudouridine synthase MG209 homolog 1
Uncharacterized RNA pseudouridine synthase MG370 1
Uncharacterized RNA pseudouridine synthase MG370 homolog 1
Uncharacterized RNA pseudouridine synthase MT1592 1
Uncharacterized RNA pseudouridine synthase Mb1567 1
Uncharacterized RNA pseudouridine synthase Rv1540 1
Uncharacterized RNA pseudouridine synthase YhcT 1
Uncharacterized RNA pseudouridine synthase YjbO 1
Uncharacterized RNA pseudouridine synthase YlyB 1
Uncharacterized RNA pseudouridine synthase ZMO0505 1
Uncharacterized RNA pseudouridine synthase aq_1758 1
Uncharacterized RNA pseudouridine synthase jhp_0321 1
Uncharacterized RNA pseudouridine synthase jhp_0682 1
Uncharacterized RNA pseudouridine synthase jhp_0890 1
Uncharacterized RNA pseudouridine synthase slr1592 1
Uncharacterized RNA pseudouridine synthase slr1629 1
Uncharacterized protein K07E8.7 1
tRNA pseudouridine synthase C 14
tRNA pseudouridine(31) synthase 1
tRNA pseudouridine(32) synthase, mitochondrial 1

Protein length

Min length 317
Max length 319
Mean length (sd) 318.7 (0.8)
Median length 319.0

Protein length distribution