PF01654


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01654, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 15 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01654
Description Cytochrome bd terminal oxidase subunit I

Occurence in the database

PF01654 is associated with 15 different proteins (see tab "Protein list" and "Profile")
The 15 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_239 FBDBKF_01810 49263 50603 -1 appC Cytochrome bd-type quinol oxidase, subunit 1 Morganella morganii S1
1 group_1516 FBDBKF_09800 52908 54470 -1 cydA cytochrome ubiquinol oxidase subunit I Morganella morganii S1
2 group_239 EHELCC_02280 437083 438423 -1 appC Cytochrome bd-type quinol oxidase, subunit 1 Morganella morganii S2
3 group_1516 EHELCC_04600 244873 246435 -1 cydA cytochrome ubiquinol oxidase subunit I Morganella morganii S2
4 group_239 NLDBIP_01180 241713 243053 1 appC Cytochrome bd-type quinol oxidase, subunit 1 Morganella morganii S4
5 group_1516 NLDBIP_04600 244669 246231 -1 cydA cytochrome ubiquinol oxidase subunit I Morganella morganii S4
6 group_239 LHKJJB_00855 149632 150972 -1 appC Cytochrome bd-type quinol oxidase, subunit 1 Morganella morganii S3
7 group_1516 LHKJJB_14030 89147 90709 1 cydA cytochrome ubiquinol oxidase subunit I Morganella morganii S3
8 group_239 HKOGLL_00895 155143 156483 -1 appC Cytochrome bd-type quinol oxidase, subunit 1 Morganella morganii S5
9 group_1516 HKOGLL_12505 53689 55251 -1 cydA cytochrome ubiquinol oxidase subunit I Morganella morganii S5
10 group_1516 F4V73_RS00545 118150 119712 1 cydA cytochrome ubiquinol oxidase subunit I Morganella psychrotolerans
11 group_239 F4V73_RS04135 873531 874871 -1 cytochrome ubiquinol oxidase subunit I Morganella psychrotolerans
12 group_1516 PMI_RS02820 621499 623067 1 cydA cytochrome ubiquinol oxidase subunit I Proteus mirabilis HI4320
13 group_239 PMI_RS06940 1518398 1519732 1 cytochrome ubiquinol oxidase subunit I Proteus mirabilis HI4320
14 group_239 PMI_RS11760 2597829 2599181 -1 cytochrome ubiquinol oxidase subunit I Proteus mirabilis HI4320