Homologs in group_1516

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09800 FBDBKF_09800 85.2 Morganella morganii S1 cydA cytochrome ubiquinol oxidase subunit I
EHELCC_04600 EHELCC_04600 85.2 Morganella morganii S2 cydA cytochrome ubiquinol oxidase subunit I
NLDBIP_04600 NLDBIP_04600 85.2 Morganella morganii S4 cydA cytochrome ubiquinol oxidase subunit I
LHKJJB_14030 LHKJJB_14030 85.2 Morganella morganii S3 cydA cytochrome ubiquinol oxidase subunit I
HKOGLL_12505 HKOGLL_12505 85.2 Morganella morganii S5 cydA cytochrome ubiquinol oxidase subunit I
F4V73_RS00545 F4V73_RS00545 84.6 Morganella psychrotolerans cydA cytochrome ubiquinol oxidase subunit I

Distribution of the homologs in the orthogroup group_1516

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1516

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ABK1 0.0 892 80 0 522 3 cydA Cytochrome bd-I ubiquinol oxidase subunit 1 Shigella flexneri
P0ABJ9 0.0 892 80 0 522 1 cydA Cytochrome bd-I ubiquinol oxidase subunit 1 Escherichia coli (strain K12)
P0ABK0 0.0 892 80 0 522 3 cydA Cytochrome bd-I ubiquinol oxidase subunit 1 Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q09049 0.0 768 69 1 525 3 cydA Cytochrome bd ubiquinol oxidase subunit 1 Azotobacter vinelandii
P45021 0.0 714 65 1 518 3 HI_1076 Probable cytochrome oxidase subunit 1 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P26459 0.0 652 61 0 506 1 appC Cytochrome bd-II ubiquinol oxidase subunit 1 Escherichia coli (strain K12)
P94364 1.89e-105 326 37 7 505 3 cydA Cytochrome bd ubiquinol oxidase subunit 1 Bacillus subtilis (strain 168)
C0SP90 1.57e-25 112 27 5 311 1 ythA Putative cytochrome bd menaquinol oxidase subunit I Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS02820
Feature type CDS
Gene cydA
Product cytochrome ubiquinol oxidase subunit I
Location 621499 - 623067 (strand: 1)
Length 1569 (nucleotides) / 522 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1516
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01654 Cytochrome bd terminal oxidase subunit I

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1271 Energy production and conversion (C) C Cytochrome bd-type quinol oxidase, subunit 1

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K00425 cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] Oxidative phosphorylation
Two-component system		 Cytochrome bd ubiquinol oxidase

Protein Sequence

MFDIVELSRLQFALTAMYHFLFVPLTLGMAFMLAIMETIYVLSGKQVYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYFSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLGKKQHLMVTWLVAFGSNFSALWILVANGWMQNPVAADFNFETMRMEMLSFADLVLNPVAQVKFVHTVAAGYCTGAFFVLGISSYYLLKGRDIGFAKRSFAVAATFGIAAVLSVIVLGDESGYEMGDVQKTKLAAIEGEWHTEPAPASFNLIAFPNQEKMENTFALQIPYVMGIIATRSFDTPVLGLHDLMSQHEVRIRNGMKAYDLLTELRSGNTDPAVRAAFNESKKDLGYGLLLKRYTENVSDATEEQIKSAVKDSIPNVAPLFWSFRIMVAAGFLMLLVVAISFWTVLSNRIGNYKWLLRAALFSIPLPWIAVEAGWFVAEYGRQPWAIGEILPTAVATSSLTQADILVSMGLICGLYTLFLVAEMFLMFKFGRLGPSSLKTGRYHFEQKTASSAQSK

Flanking regions ( +/- flanking 50bp)

AGTCGGGTTGCCGCAAGTCGGTGTCTTCCTGCTAGGAGCAAGGAGTCAAGATGTTTGATATTGTCGAACTGTCACGGTTACAGTTTGCCTTAACAGCGATGTATCACTTCCTGTTTGTCCCATTAACGCTCGGTATGGCGTTTATGTTGGCAATCATGGAAACGATATATGTCCTGTCAGGTAAACAAGTTTACAAAGATATGACAAAGTTCTGGGGTAAGTTATTCGGTATTAACTTTGCTCTGGGTGTCGCAACTGGTTTGACCATGGAGTTCCAATTTGGTACTAACTGGTCATATTTCTCTCATTACGTTGGTGATATCTTCGGTGCGCCTTTAGCAATCGAAGGTCTGATGGCATTCTTCTTAGAATCAACTTTCGTCGGATTATTCTTCTTCGGTTGGGATCGTTTAGGCAAGAAGCAACACTTAATGGTAACTTGGTTAGTTGCCTTTGGTTCTAACTTCTCTGCGCTGTGGATCTTAGTCGCAAATGGTTGGATGCAAAACCCTGTTGCTGCAGACTTCAACTTTGAAACCATGCGAATGGAAATGTTGAGTTTTGCTGATCTGGTCTTAAACCCAGTTGCTCAGGTGAAATTTGTTCACACCGTTGCTGCAGGTTACTGTACTGGTGCATTCTTTGTTTTAGGTATCAGCTCTTACTACCTACTCAAAGGTCGTGACATCGGTTTTGCAAAACGTTCTTTCGCTGTTGCGGCAACCTTTGGTATCGCTGCGGTATTATCTGTTATCGTACTGGGTGATGAATCTGGTTATGAAATGGGTGACGTACAAAAAACCAAATTGGCTGCTATTGAAGGTGAGTGGCATACAGAGCCAGCACCAGCTTCCTTTAACTTGATTGCATTCCCTAATCAAGAAAAAATGGAAAACACGTTTGCTCTACAAATTCCATATGTCATGGGTATTATAGCAACACGTTCTTTTGATACGCCGGTATTAGGTCTGCATGATCTGATGAGCCAGCATGAAGTGCGTATTCGTAATGGTATGAAAGCGTATGACCTGTTAACTGAACTACGTTCAGGTAACACTGATCCTGCCGTACGAGCTGCATTTAATGAGTCTAAAAAAGACTTAGGCTACGGTCTATTATTGAAGCGTTATACTGAAAATGTTTCTGATGCAACTGAAGAGCAAATTAAGTCAGCTGTAAAAGATTCTATTCCTAACGTCGCACCACTTTTCTGGTCATTCCGTATCATGGTCGCGGCCGGCTTCTTGATGTTACTGGTTGTTGCGATCTCCTTCTGGACTGTTCTGTCTAACCGTATCGGTAACTACAAATGGTTACTGCGTGCTGCGCTATTTAGTATTCCATTACCATGGATTGCTGTTGAAGCGGGCTGGTTTGTTGCAGAATATGGACGTCAACCATGGGCGATTGGTGAAATCTTGCCTACGGCTGTAGCAACTTCTTCACTGACACAGGCTGATATTCTCGTTTCTATGGGACTTATCTGCGGTCTGTATACTCTGTTCCTCGTTGCCGAAATGTTCCTGATGTTCAAATTTGGTCGCCTTGGCCCAAGTAGTCTGAAAACGGGTCGCTATCACTTTGAACAGAAGACAGCTTCTTCTGCACAAAGTAAGTAACACAGGAGTCCACTATGTTTGATTATGAAGTATTGCGGTTTGTTTGGTGG