PF01612


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01612, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01612
Description 3'-5' exonuclease

Occurence in the database

PF01612 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_652 FBDBKF_02230 137482 138627 1 rnd ribonuclease D Morganella morganii S1
1 group_1704 FBDBKF_11880 25456 28248 -1 polA DNA polymerase I Morganella morganii S1
2 group_652 EHELCC_02700 525302 526447 1 rnd ribonuclease D Morganella morganii S2
3 group_1704 EHELCC_14425 106457 109249 1 polA DNA polymerase I Morganella morganii S2
4 group_652 NLDBIP_00760 153689 154834 -1 rnd ribonuclease D Morganella morganii S4
5 group_1704 NLDBIP_15520 110394 113186 1 polA DNA polymerase I Morganella morganii S4
6 group_652 LHKJJB_01275 237851 238996 1 rnd ribonuclease D Morganella morganii S3
7 group_1704 LHKJJB_15090 25456 28248 -1 polA DNA polymerase I Morganella morganii S3
8 group_652 HKOGLL_01315 243362 244507 1 rnd ribonuclease D Morganella morganii S5
9 group_1704 HKOGLL_14210 12119 14911 -1 polA DNA polymerase I Morganella morganii S5
10 group_652 F4V73_RS04600 974258 975409 1 rnd ribonuclease D Morganella psychrotolerans
11 group_1704 F4V73_RS14775 189267 192065 1 polA DNA polymerase I Morganella psychrotolerans
12 group_652 PMI_RS05630 1228527 1229645 1 rnd ribonuclease D Proteus mirabilis HI4320
13 group_1704 PMI_RS13960 3099477 3102275 -1 polA DNA polymerase I Proteus mirabilis HI4320