PF01547


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01547, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01547
Description Bacterial extracellular solute-binding protein

Occurence in the database

PF01547 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1092 FBDBKF_06210 70990 72000 1 thiB thiamine ABC transporter substrate binding subunit Morganella morganii S1
1 group_1092 EHELCC_09255 71562 72572 1 thiB thiamine ABC transporter substrate binding subunit Morganella morganii S2
2 group_1092 NLDBIP_09635 71562 72572 1 thiB thiamine ABC transporter substrate binding subunit Morganella morganii S4
3 group_1092 LHKJJB_08120 144666 145676 -1 thiB thiamine ABC transporter substrate binding subunit Morganella morganii S3
4 group_1092 HKOGLL_07670 144666 145676 -1 thiB thiamine ABC transporter substrate binding subunit Morganella morganii S5
5 group_1092 F4V73_RS15705 142220 143236 -1 thiB thiamine ABC transporter substrate binding subunit Morganella psychrotolerans
6 group_1092 PMI_RS11485 2530367 2531332 1 thiB thiamine ABC transporter substrate binding subunit Proteus mirabilis HI4320
7 group_348 PMI_RS14670 3251223 3253424 -1 extracellular solute-binding protein Proteus mirabilis HI4320