PF01522


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01522, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01522
Description Polysaccharide deacetylase

Occurence in the database

PF01522 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1800 FBDBKF_13365 50144 51037 -1 arnD 4-deoxy-4-formamido-L-arabinose-phosphoundecapren ol deformylase Morganella morganii S1
1 group_3001 FBDBKF_17590 13287 14600 1 cDA1 Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family Morganella morganii S1
2 group_1800 EHELCC_08730 224154 225047 1 arnD 4-deoxy-4-formamido-L-arabinose-phosphoundecapren ol deformylase Morganella morganii S2
3 group_3001 EHELCC_18075 12663 13976 1 cDA1 Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family Morganella morganii S2
4 group_1800 NLDBIP_09055 224154 225047 1 arnD 4-deoxy-4-formamido-L-arabinose-phosphoundecapren ol deformylase Morganella morganii S4
5 group_3001 NLDBIP_18075 24761 26074 -1 cDA1 Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family Morganella morganii S4
6 group_1800 LHKJJB_05210 32112 33005 -1 arnD 4-deoxy-4-formamido-L-arabinose-phosphoundecapren ol deformylase Morganella morganii S3
7 group_3001 LHKJJB_18270 24761 26074 -1 cDA1 Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family Morganella morganii S3
8 group_1800 HKOGLL_05705 208745 209638 1 arnD 4-deoxy-4-formamido-L-arabinose-phosphoundecapren ol deformylase Morganella morganii S5
9 group_3001 HKOGLL_17930 12663 13976 1 cDA1 Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family Morganella morganii S5
10 group_1800 F4V73_RS03395 724774 725667 1 arnD 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase Morganella psychrotolerans
11 group_3001 F4V73_RS14970 231841 233166 1 polysaccharide deacetylase family protein Morganella psychrotolerans
12 group_1800 PMI_RS05085 1111761 1112654 1 arnD 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase Proteus mirabilis HI4320