Homologs in group_3001

Help

5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_18075 EHELCC_18075 100.0 Morganella morganii S2 cDA1 Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family
NLDBIP_18075 NLDBIP_18075 100.0 Morganella morganii S4 cDA1 Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family
LHKJJB_18270 LHKJJB_18270 100.0 Morganella morganii S3 cDA1 Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family
HKOGLL_17930 HKOGLL_17930 100.0 Morganella morganii S5 cDA1 Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family
F4V73_RS14970 F4V73_RS14970 84.7 Morganella psychrotolerans - polysaccharide deacetylase family protein

Distribution of the homologs in the orthogroup group_3001

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_3001

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P31666 2.31e-119 357 46 5 391 3 yadE Uncharacterized protein YadE Escherichia coli (strain K12)
Q8NUI6 3.06e-16 82 26 5 227 3 icaB Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase Staphylococcus aureus (strain MW2)
Q6G606 3.06e-16 82 26 5 227 3 icaB Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase Staphylococcus aureus (strain MSSA476)
Q9RQP7 3.06e-16 82 26 5 227 3 icaB Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q5HCM9 3.17e-16 82 26 5 227 3 icaB Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase Staphylococcus aureus (strain COL)
Q7A349 3.21e-16 82 26 5 227 3 icaB Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase Staphylococcus aureus (strain N315)
Q99QX2 3.21e-16 82 26 5 227 3 icaB Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q6GDD6 4.91e-16 81 26 5 227 3 icaB Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase Staphylococcus aureus (strain MRSA252)
P94361 8.04e-16 80 27 8 249 3 yxkH Putative polysaccharide deacetylase YxkH Bacillus subtilis (strain 168)
Q5HKP8 3.96e-12 70 26 4 195 3 icaB Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q6TYB1 3.96e-12 70 26 4 195 1 icaB Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase Staphylococcus epidermidis
P75906 1.18e-06 54 23 7 237 1 pgaB Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase Escherichia coli (strain K12)
Q8XAR3 1.67e-06 53 23 7 237 3 pgaB Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_17590
Feature type CDS
Gene cDA1
Product Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family
Location 13287 - 14600 (strand: 1)
Length 1314 (nucleotides) / 437 (amino acids)

Contig

Accession contig_29
Length 39360 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3001
Orthogroup size 6
N. genomes 6

Actions

Genomic region

Domains

PF01522 Polysaccharide deacetylase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0726 Carbohydrate transport and metabolism (G)
Cell wall/membrane/envelope biogenesis (M)		 GM Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family

Protein Sequence

MRNVLFIFMILFSVAGVSRAAEVPSDSQEWLLKDEPPVLIQVKEPQVIFAPVAGVMQGVAELNPSHGFYIYPMKGEFRELQFGNDRGFIGSEQLSDKKPKVVPPLDTLNELNNPIYDYLITISNTNVFGSPDESKSPVATLFGDLRYPVLAKMVRENREGEKIVWLTIRLADRLAYIRLSDVELDKGIPILTYHHILKDSENRNFRHTSTTTSVEAFKAQMDYLKQAGYRTISLDDVAGYLAKENNLPGKVVALTFDDGLKSVYRYAYPILKQNDQKATLFVISSRVKSKPQKWAPDGLQFMCWPELMQSRDVFDIQSHTHFLHRLDNRKNPIIFSRKEHTILLDYQRSQRVLAKLNPEQHYLAYPFGAYNQDAMDAAQQAGMTMAVTTIQGKVRLGDNPYALKRLYALRTDPIEKFATMIGNSGPEVVNKDIVVDR

Flanking regions ( +/- flanking 50bp)

TTTTTTAAGGGGGGCTTTTTTGTGCAGTACACCAGGTAAACGGGCATATTATGCGCAACGTATTGTTTATTTTTATGATTTTATTTTCTGTCGCCGGTGTCAGCCGGGCGGCAGAAGTGCCTTCTGATTCTCAGGAATGGTTACTGAAAGATGAACCGCCGGTTTTGATTCAGGTAAAAGAACCGCAGGTGATTTTTGCTCCGGTGGCCGGTGTGATGCAGGGGGTTGCGGAACTGAACCCGTCACACGGTTTTTATATTTATCCGATGAAGGGCGAATTCCGTGAATTACAGTTTGGTAATGATCGCGGTTTTATCGGCAGCGAACAGCTGTCAGATAAAAAACCTAAAGTCGTGCCGCCGCTGGATACACTGAATGAACTCAATAATCCGATTTATGATTATCTGATAACCATCAGCAACACCAATGTGTTTGGCTCGCCGGATGAATCTAAATCCCCTGTTGCCACCCTGTTTGGTGATCTGCGTTATCCGGTGCTGGCCAAAATGGTCAGGGAAAACCGGGAAGGTGAAAAAATTGTCTGGCTGACTATCCGCCTGGCGGACAGACTGGCGTACATCCGCCTGTCAGATGTGGAACTGGACAAAGGGATTCCGATCCTGACGTATCACCATATCCTGAAAGACAGTGAAAACAGGAACTTCCGTCATACCTCGACCACCACATCCGTTGAAGCCTTTAAGGCGCAGATGGATTATCTGAAGCAGGCCGGTTACCGGACGATTTCCCTTGATGATGTGGCCGGTTATCTGGCGAAGGAAAATAACCTGCCGGGTAAAGTGGTGGCGCTGACGTTCGACGATGGCCTGAAATCGGTTTACCGCTATGCATATCCGATCCTGAAGCAGAATGATCAGAAAGCCACACTGTTTGTGATTTCCTCGCGGGTGAAATCAAAACCGCAGAAATGGGCACCGGACGGATTGCAGTTTATGTGCTGGCCGGAGCTGATGCAGTCACGGGATGTGTTTGATATTCAGTCACATACGCATTTTTTACATCGGCTGGATAACCGCAAAAACCCGATTATTTTCAGCCGCAAGGAGCACACGATCCTGCTGGATTACCAGCGTTCGCAGCGTGTTCTGGCGAAACTGAACCCTGAACAGCATTACCTGGCATATCCATTCGGGGCATACAACCAGGATGCGATGGATGCAGCACAGCAGGCCGGTATGACGATGGCCGTCACCACCATTCAGGGGAAAGTCCGCCTCGGCGATAATCCGTATGCGCTGAAACGCCTGTATGCACTGCGCACCGACCCGATTGAGAAATTTGCCACCATGATTGGTAACAGTGGTCCGGAAGTGGTGAATAAGGATATTGTTGTCGACAGATAATCCCGTTTTTATATAACAACTCACGGCCTGATAATAACGATTATCAGGCC