Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01488, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 14 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link | PF01488 |
---|---|
Description | Shikimate / quinate 5-dehydrogenase |
Occurence in the database
PF01488 is associated with 14 different proteins (see tab "Protein list" and "Profile") |
The 14 proteins are classified into 2 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_610 | FBDBKF_01920 | 71158 | 72420 | 1 | hemA | glutamyl-tRNA reductase | Morganella morganii S1 |
1 | group_2362 | FBDBKF_19060 | 1174 | 1992 | -1 | aroE | shikimate dehydrogenase | Morganella morganii S1 |
2 | group_610 | EHELCC_02390 | 458978 | 460240 | 1 | hemA | glutamyl-tRNA reductase | Morganella morganii S2 |
3 | group_2362 | EHELCC_18805 | 1174 | 1992 | -1 | aroE | shikimate dehydrogenase | Morganella morganii S2 |
4 | group_610 | NLDBIP_01070 | 219896 | 221158 | -1 | hemA | glutamyl-tRNA reductase | Morganella morganii S4 |
5 | group_2362 | NLDBIP_18820 | 1174 | 1992 | -1 | aroE | shikimate dehydrogenase | Morganella morganii S4 |
6 | group_610 | LHKJJB_00965 | 171527 | 172789 | 1 | hemA | glutamyl-tRNA reductase | Morganella morganii S3 |
7 | group_2362 | LHKJJB_18675 | 1174 | 1992 | -1 | aroE | shikimate dehydrogenase | Morganella morganii S3 |
8 | group_610 | HKOGLL_01005 | 177038 | 178300 | 1 | hemA | glutamyl-tRNA reductase | Morganella morganii S5 |
9 | group_2362 | HKOGLL_18410 | 1174 | 1992 | -1 | aroE | shikimate dehydrogenase | Morganella morganii S5 |
10 | group_610 | F4V73_RS04265 | 901399 | 902661 | 1 | hemA | glutamyl-tRNA reductase | Morganella psychrotolerans |
11 | group_2362 | F4V73_RS19105 | 28682 | 29497 | 1 | aroE | shikimate dehydrogenase | Morganella psychrotolerans |
12 | group_610 | PMI_RS05260 | 1149255 | 1150517 | 1 | hemA | glutamyl-tRNA reductase | Proteus mirabilis HI4320 |
13 | group_2362 | PMI_RS16330 | 3604307 | 3605131 | 1 | aroE | shikimate dehydrogenase | Proteus mirabilis HI4320 |