Orthogroup:group_683


Homologs in group_683

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_02615 FBDBKF_02615 Morganella morganii S1 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family
EHELCC_03085 EHELCC_03085 Morganella morganii S2 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family
NLDBIP_00375 NLDBIP_00375 Morganella morganii S4 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family
LHKJJB_01660 LHKJJB_01660 Morganella morganii S3 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family
HKOGLL_01700 HKOGLL_01700 Morganella morganii S5 ridA Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family
F4V73_RS05075 F4V73_RS05075 Morganella psychrotolerans - RidA family protein
PMI_RS13995 PMI_RS13995 Proteus mirabilis HI4320 - RidA family protein

Distribution of group_683 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_683 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_683

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_683.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 ridA 5
2 - 2

Product

# Product Occurence
1 Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family 5
2 RidA family protein 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0251 7 V Defense mechanisms (V) Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K09022 7 2-iminobutanoate/2-iminopropanoate deaminase [EC:3.5.99.10] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01042 7 Endoribonuclease L-PSP

Annotations of the 37 SwissProt hits

Annotation Number of occurrences
2-aminomuconate deaminase 1
2-iminobutanoate/2-iminopropanoate deaminase 8
3-aminoacrylate deaminase RutC 5
Protein DfrA 1
Protein HMF1 1
Putative reactive intermediate deaminase TdcF 3
Putative regulator AldR 1
Reactive Intermediate Deaminase A, chloroplastic 1
RutC family protein BU371 1
RutC family protein BUsg_359 1
RutC family protein HD_0322 1
RutC family protein HI_0719 1
RutC family protein HI_1627 1
RutC family protein HP_0944 1
RutC family protein PH0854 1
RutC family protein PM1466 1
RutC family protein PYRAB12510 1
RutC family protein SSO3206 1
RutC family protein STK_08110 1
RutC family protein bbp_334 1
RutC family protein in leuC 5'region 1
RutC family protein in vnfA 5'region 1
RutC family protein jhp_0879 1
RutC family protein slr0709 1

Protein length

Min length 162
Max length 165
Mean length (sd) 162.4 (1.1)
Median length 162.0

Protein length distribution