PF01478


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01478, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01478
Description Type IV leader peptidase family

Occurence in the database

PF01478 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2005 FBDBKF_15070 23306 23959 1 pulO Prepilin signal peptidase PulO (type II secretory pathway) or related peptidase Morganella morganii S1
1 group_2005 EHELCC_11175 60947 61600 -1 pulO Prepilin signal peptidase PulO (type II secretory pathway) or related peptidase Morganella morganii S2
2 group_2005 NLDBIP_11520 60947 61600 -1 pulO Prepilin signal peptidase PulO (type II secretory pathway) or related peptidase Morganella morganii S4
3 group_2005 LHKJJB_11380 60947 61600 -1 pulO Prepilin signal peptidase PulO (type II secretory pathway) or related peptidase Morganella morganii S3
4 group_2005 HKOGLL_09990 60947 61600 -1 pulO Prepilin signal peptidase PulO (type II secretory pathway) or related peptidase Morganella morganii S5
5 group_2005 F4V73_RS12380 61613 62302 -1 A24 family peptidase Morganella psychrotolerans
6 group_2005 PMI_RS01635 390920 391552 1 A24 family peptidase Proteus mirabilis HI4320