Homologs in group_2005

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15070 FBDBKF_15070 68.5 Morganella morganii S1 pulO Prepilin signal peptidase PulO (type II secretory pathway) or related peptidase
EHELCC_11175 EHELCC_11175 68.5 Morganella morganii S2 pulO Prepilin signal peptidase PulO (type II secretory pathway) or related peptidase
NLDBIP_11520 NLDBIP_11520 68.5 Morganella morganii S4 pulO Prepilin signal peptidase PulO (type II secretory pathway) or related peptidase
LHKJJB_11380 LHKJJB_11380 68.5 Morganella morganii S3 pulO Prepilin signal peptidase PulO (type II secretory pathway) or related peptidase
HKOGLL_09990 HKOGLL_09990 68.5 Morganella morganii S5 pulO Prepilin signal peptidase PulO (type II secretory pathway) or related peptidase
PMI_RS01635 PMI_RS01635 31.1 Proteus mirabilis HI4320 - A24 family peptidase

Distribution of the homologs in the orthogroup group_2005

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2005

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P31712 1.13e-16 80 36 2 136 1 outO Prepilin leader peptidase/N-methyltransferase Pectobacterium carotovorum subsp. carotovorum
P33566 5.03e-16 78 34 3 137 3 pilD Prepilin leader peptidase/N-methyltransferase Neisseria gonorrhoeae
P31711 4.99e-14 72 33 3 147 3 outO Prepilin leader peptidase/N-methyltransferase Dickeya chrysanthemi
Q56740 3.06e-12 67 31 4 148 3 vvpD Prepilin leader peptidase/N-methyltransferase Vibrio vulnificus (strain CMCP6)
P15754 6.21e-12 66 37 0 93 3 pulO Prepilin leader peptidase/N-methyltransferase Klebsiella pneumoniae
O68932 1.93e-11 63 33 3 147 3 hopD Leader peptidase HopD Escherichia coli
P0C423 7.74e-11 63 36 3 144 3 tapD Prepilin leader peptidase/N-methyltransferase Aeromonas salmonicida
A2T195 7.74e-11 63 36 3 144 3 tapD Prepilin leader peptidase/N-methyltransferase Aeromonas salmonicida (strain A449)
P25960 1.25e-10 62 33 2 147 1 gspO Prepilin leader peptidase/N-methyltransferase Escherichia coli (strain K12)
P36642 2.33e-10 62 34 4 138 3 pilD Prepilin leader peptidase/N-methyltransferase Pseudomonas putida
O68927 2.75e-10 60 35 3 131 3 hopD Leader peptidase HopD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q56763 2.75e-09 59 31 3 137 3 xpsO Prepilin leader peptidase/N-methyltransferase Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
P45794 4.51e-09 58 35 3 144 3 tapD Prepilin leader peptidase/N-methyltransferase Aeromonas hydrophila
Q46836 6.04e-08 55 33 5 135 1 pppA Prepilin peptidase PppA Escherichia coli (strain K12)
E3PJ89 6.45e-08 55 34 5 132 3 pppA Type 4 prepilin-like proteins leader peptide-processing enzyme Escherichia coli O78:H11 (strain H10407 / ETEC)
O68433 1.34e-07 54 31 3 135 3 pilD Prepilin leader peptidase/N-methyltransferase Legionella pneumophila
P0DMK9 2.61e-07 53 35 1 100 3 gspO Prepilin leader peptidase/N-methyltransferase Burkholderia pseudomallei (strain K96243)
I1WFC0 2.63e-07 53 35 1 100 3 gspO Prepilin leader peptidase/N-methyltransferase Burkholderia pseudomallei (strain 1026b)
P22610 1.54e-06 51 38 4 101 1 pilD Prepilin leader peptidase/N-methyltransferase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P0C6D9 1.26e-05 48 25 2 154 3 tcpJ Prepilin leader peptidase/N-methyltransferase Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A5F385 1.26e-05 48 25 2 154 3 tcpJ Prepilin leader peptidase/N-methyltransferase Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Q46525 1.3e-05 48 32 0 104 3 fimP Prepilin leader peptidase/N-methyltransferase Dichelobacter nodosus
Q9ZEL6 4.04e-05 47 34 4 138 3 pilD Prepilin leader peptidase/N-methyltransferase Stutzerimonas stutzeri

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS12380
Feature type CDS
Gene -
Product A24 family peptidase
Location 61613 - 62302 (strand: -1)
Length 690 (nucleotides) / 229 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2005
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01478 Type IV leader peptidase family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1989 Cell motility (N)
Intracellular trafficking, secretion, and vesicular transport (U)		 NU Prepilin signal peptidase PulO (type II secretory pathway) or related peptidase

Protein Sequence

MEKRKTTWKIQGQMNGLIMISWALLLPLPLKTGTEYILRHYYQYPQKLHGGWLFFHCLLAGGLIVYWSDRQVLCAAYYSLLFICLIILFHIDNAVFYLPDKLVFSVLWGGLLFQTEVQEIPFSDALYGVIAGFVLLWAVAAGYAWRQKQSGLGGGDIKLFSAMGAWVGAEKLAILMLLACASALIVSLLRYIRARHDNSLHSGTRIIAFGPHLIAGMIIVMSIMSGGGF

Flanking regions ( +/- flanking 50bp)

ACAGGGAAAATCCCGGGCATTTTCAGCCGGTGTCGGGCAGGCTGAATGCTATGGAAAAAAGAAAAACGACATGGAAGATACAGGGACAAATGAACGGGTTGATTATGATTAGCTGGGCATTATTATTGCCTTTGCCATTAAAAACGGGAACGGAATATATTCTGCGTCACTATTATCAGTATCCGCAAAAGCTGCATGGAGGATGGCTGTTTTTTCACTGTTTGCTTGCAGGCGGGCTGATTGTGTATTGGTCAGACAGACAGGTTCTGTGTGCGGCATATTACTCACTGCTGTTTATTTGCCTGATTATACTGTTTCATATTGATAATGCTGTATTTTATCTGCCGGATAAACTGGTTTTTTCTGTGCTGTGGGGTGGATTATTGTTTCAGACAGAAGTACAGGAAATACCTTTTTCAGATGCATTATACGGGGTTATTGCCGGGTTTGTTTTGTTATGGGCTGTGGCGGCGGGATACGCATGGCGGCAAAAACAGAGCGGGCTGGGCGGCGGGGATATCAAACTATTCTCTGCTATGGGCGCCTGGGTAGGGGCAGAAAAACTGGCAATACTGATGCTGCTCGCCTGCGCATCAGCGCTGATTGTGTCTCTGCTGCGCTATATCCGTGCGCGGCATGATAACTCCCTGCACAGCGGCACGCGCATTATCGCGTTCGGACCGCATTTAATTGCAGGGATGATTATCGTGATGAGTATTATGTCAGGCGGTGGGTTTTAACTGCGCGATCAGTGTATCCCAATCGGATTTTCCGCCCAAAACCGCCTGGT