PF01471


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01471, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01471
Description Putative peptidoglycan binding domain

Occurence in the database

PF01471 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1244 FBDBKF_07235 123932 125665 1 ldtD L,D-transpeptidase Morganella morganii S1
1 group_2178 FBDBKF_16395 3550 4377 1 ampD N-acetyl-anhydromuramyl-L-alanine amidase AmpD Morganella morganii S1
2 group_1244 EHELCC_03735 60521 62254 -1 ldtD L,D-transpeptidase Morganella morganii S2
3 group_2178 EHELCC_08260 120536 121363 1 ampD N-acetyl-anhydromuramyl-L-alanine amidase AmpD Morganella morganii S2
4 group_1244 NLDBIP_03735 60317 62050 -1 ldtD L,D-transpeptidase Morganella morganii S4
5 group_2178 NLDBIP_08585 120536 121363 1 ampD N-acetyl-anhydromuramyl-L-alanine amidase AmpD Morganella morganii S4
6 group_2178 LHKJJB_05680 135796 136623 -1 ampD N-acetyl-anhydromuramyl-L-alanine amidase AmpD Morganella morganii S3
7 group_1244 LHKJJB_09565 60431 62164 -1 ldtD L,D-transpeptidase Morganella morganii S3
8 group_2178 HKOGLL_05235 105127 105954 1 ampD N-acetyl-anhydromuramyl-L-alanine amidase AmpD Morganella morganii S5
9 group_1244 HKOGLL_09410 128888 130621 1 ldtD L,D-transpeptidase Morganella morganii S5
10 group_1244 F4V73_RS01420 311910 313664 1 ldtD L,D-transpeptidase Morganella psychrotolerans
11 group_2178 F4V73_RS02920 620050 620883 1 N-acetylmuramoyl-L-alanine amidase Morganella psychrotolerans
12 group_1244 PMI_RS03590 804395 806110 1 ldtD L,D-transpeptidase Proteus mirabilis HI4320
13 group_2178 PMI_RS07810 1710032 1710916 -1 N-acetylmuramoyl-L-alanine amidase Proteus mirabilis HI4320