PF01408


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01408, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 26 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01408
Description Oxidoreductase family, NAD-binding Rossmann fold

Occurence in the database

PF01408 is associated with 26 different proteins (see tab "Protein list" and "Profile")
The 26 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_924 FBDBKF_05020 9631 10671 -1 mviM putative dehydrogenase Morganella morganii S1
1 group_2697 FBDBKF_05650 137425 138351 -1 mviM putative dehydrogenase Morganella morganii S1
2 group_1292 FBDBKF_07865 101610 102569 1 lys9 diaminopimelate dehydrogenase Morganella morganii S1
3 group_3017 FBDBKF_17890 16628 17716 1 pchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis Morganella morganii S1
4 group_3017 EHELCC_06445 18660 19748 -1 pchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis Morganella morganii S2
5 group_2697 EHELCC_11940 43143 44069 1 mviM putative dehydrogenase Morganella morganii S2
6 group_924 EHELCC_12570 170823 171863 1 mviM putative dehydrogenase Morganella morganii S2
7 group_1292 EHELCC_13695 75804 76763 1 lys9 diaminopimelate dehydrogenase Morganella morganii S2
8 group_3017 NLDBIP_06765 18533 19621 -1 pchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis Morganella morganii S4
9 group_2697 NLDBIP_12280 43098 44024 1 mviM putative dehydrogenase Morganella morganii S4
10 group_924 NLDBIP_12910 170778 171818 1 mviM putative dehydrogenase Morganella morganii S4
11 group_1292 NLDBIP_14140 96679 97638 1 lys9 diaminopimelate dehydrogenase Morganella morganii S4
12 group_1292 LHKJJB_08710 62111 63070 -1 lys9 diaminopimelate dehydrogenase Morganella morganii S3
13 group_2697 LHKJJB_12140 43143 44069 1 mviM putative dehydrogenase Morganella morganii S3
14 group_924 LHKJJB_12770 170823 171863 1 mviM putative dehydrogenase Morganella morganii S3
15 group_3017 LHKJJB_18895 16636 17724 1 pchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis Morganella morganii S3
16 group_3017 HKOGLL_04625 250020 251108 1 pchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis Morganella morganii S5
17 group_1292 HKOGLL_08260 62111 63070 -1 lys9 diaminopimelate dehydrogenase Morganella morganii S5
18 group_2697 HKOGLL_10755 43143 44069 1 mviM putative dehydrogenase Morganella morganii S5
19 group_924 HKOGLL_11385 170823 171863 1 mviM putative dehydrogenase Morganella morganii S5
20 group_2697 F4V73_RS03655 776589 777524 1 Gfo/Idh/MocA family oxidoreductase Morganella psychrotolerans
21 group_924 F4V73_RS05460 1161358 1162398 -1 oxidoreductase Morganella psychrotolerans
22 group_1292 F4V73_RS13155 247855 248748 -1 diaminopimelate dehydrogenase Morganella psychrotolerans
23 group_1292 PMI_RS00725 186853 187752 1 diaminopimelate dehydrogenase Proteus mirabilis HI4320
24 group_924 PMI_RS06280 1377259 1378302 -1 oxidoreductase Proteus mirabilis HI4320
25 group_3017 PMI_RS12845 2850279 2851367 1 Gfo/Idh/MocA family oxidoreductase Proteus mirabilis HI4320