PF01389


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01389, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01389
Description OmpA-like transmembrane domain

Occurence in the database

PF01389 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_185 FBDBKF_07340 152157 153230 -1 ompA porin OmpA Morganella morganii S1
1 group_185 EHELCC_03630 32956 34029 1 ompA porin OmpA Morganella morganii S2
2 group_185 NLDBIP_03630 32752 33825 1 ompA porin OmpA Morganella morganii S4
3 group_185 LHKJJB_09460 32866 33939 1 ompA porin OmpA Morganella morganii S3
4 group_185 HKOGLL_09515 157113 158186 -1 ompA porin OmpA Morganella morganii S5
5 group_185 F4V73_RS01525 340580 341659 -1 ompA porin OmpA Morganella psychrotolerans
6 group_185 PMI_RS03855 873336 874424 -1 ompA porin OmpA Proteus mirabilis HI4320