PF01386


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01386, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01386
Description Ribosomal L25p family

Occurence in the database

PF01386 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1986 FBDBKF_14895 80361 80642 1 rplY 50S ribosomal protein L25 Morganella morganii S1
1 group_1986 EHELCC_15700 110437 110718 1 rplY 50S ribosomal protein L25 Morganella morganii S2
2 group_1986 NLDBIP_16230 110437 110718 1 rplY 50S ribosomal protein L25 Morganella morganii S4
3 group_1986 LHKJJB_15610 5968 6249 -1 rplY 50S ribosomal protein L25 Morganella morganii S3
4 group_1986 HKOGLL_14730 5180 5461 -1 rplY 50S ribosomal protein L25 Morganella morganii S5
5 group_1986 F4V73_RS07695 1609917 1610198 1 rplY 50S ribosomal protein L25 Morganella psychrotolerans
6 group_1986 PMI_RS04055 908196 908480 -1 rplY 50S ribosomal protein L25 Proteus mirabilis HI4320