Orthogroup:group_2023


Homologs in group_2023

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_15180 FBDBKF_15180 Morganella morganii S1 dinB DNA polymerase IV
EHELCC_11065 EHELCC_11065 Morganella morganii S2 dinB DNA polymerase IV
NLDBIP_11410 NLDBIP_11410 Morganella morganii S4 dinB DNA polymerase IV
LHKJJB_11270 LHKJJB_11270 Morganella morganii S3 dinB DNA polymerase IV
HKOGLL_09880 HKOGLL_09880 Morganella morganii S5 dinB DNA polymerase IV
F4V73_RS12265 F4V73_RS12265 Morganella psychrotolerans dinB DNA polymerase IV
PMI_RS01735 PMI_RS01735 Proteus mirabilis HI4320 dinB DNA polymerase IV

Distribution of group_2023 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2023 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2023

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2023.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 dinB 7

Product

# Product Occurence
1 DNA polymerase IV 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0389 7 L Replication, recombination and repair (L) Nucleotidyltransferase/DNA polymerase DinP involved in DNA repair

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K02346 7 DNA polymerase IV [EC:2.7.7.7] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00817 7 impB/mucB/samB family
PF11799 7 impB/mucB/samB family C-terminal domain
PF21999 7 DNA polymerase-iota, thumb domain

Annotations of the 259 SwissProt hits

Annotation Number of occurrences
DNA polymerase IV 208
DNA polymerase IV (Fragment) 1
DNA polymerase IV 1 9
DNA polymerase IV 2 9
DNA polymerase IV 3 1
DNA polymerase eta 4
DNA polymerase iota 3
DNA polymerase kappa 5
DNA repair protein REV1 6
DNA repair protein Rev1 1
DNA repair protein homolog YobH 1
DNA repair protein rev1 1
N-acetyltransferase eso1 1
Protein ImpB 1
Protein MucB 2
Protein SamB 1
Protein UmuC 2
Putative UV-damage repair protein UvrX 1
Uncharacterized protein MG360 1
Uncharacterized protein MG360 homolog 1

Protein length

Unique protein length 351

Protein length distribution