PF01312


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01312, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 15 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01312
Description FlhB HrpN YscU SpaS Family

Occurence in the database

PF01312 is associated with 15 different proteins (see tab "Protein list" and "Profile")
The 15 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_478 FBDBKF_00750 136451 137602 -1 flhB flagellar biosynthesis protein FlhB Morganella morganii S1
1 group_313 FBDBKF_09295 91690 92739 -1 flhB Flagellar biosynthesis protein FlhB Morganella morganii S1
2 group_478 EHELCC_00795 171266 172417 1 flhB flagellar biosynthesis protein FlhB Morganella morganii S2
3 group_313 EHELCC_10115 53365 54414 1 flhB Flagellar biosynthesis protein FlhB Morganella morganii S2
4 group_478 NLDBIP_02665 507719 508870 -1 flhB flagellar biosynthesis protein FlhB Morganella morganii S4
5 group_313 NLDBIP_10460 31636 32685 1 flhB Flagellar biosynthesis protein FlhB Morganella morganii S4
6 group_478 LHKJJB_04180 114960 116111 -1 flhB flagellar biosynthesis protein FlhB Morganella morganii S3
7 group_313 LHKJJB_10895 158843 159892 -1 flhB Flagellar biosynthesis protein FlhB Morganella morganii S3
8 group_478 HKOGLL_02865 171471 172622 1 flhB flagellar biosynthesis protein FlhB Morganella morganii S5
9 group_313 HKOGLL_13955 92144 93193 -1 flhB Flagellar biosynthesis protein FlhB Morganella morganii S5
10 group_478 F4V73_RS06750 1401412 1402554 -1 flhB flagellar biosynthesis protein FlhB Morganella psychrotolerans
11 group_313 F4V73_RS08350 1728992 1730056 1 EscU/YscU/HrcU family type III secretion system export apparatus switch protein Morganella psychrotolerans
12 group_313 F4V73_RS10670 262728 263792 1 EscU/YscU/HrcU family type III secretion system export apparatus switch protein Morganella psychrotolerans
13 group_478 PMI_RS08105 1770967 1772115 -1 flhB flagellar biosynthesis protein FlhB Proteus mirabilis HI4320
14 group_313 PMI_RS13230 2937788 2938849 -1 EscU/YscU/HrcU family type III secretion system export apparatus switch protein Proteus mirabilis HI4320