Homologs in group_313

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09295 FBDBKF_09295 28.3 Morganella morganii S1 flhB Flagellar biosynthesis protein FlhB
EHELCC_10115 EHELCC_10115 28.3 Morganella morganii S2 flhB Flagellar biosynthesis protein FlhB
NLDBIP_10460 NLDBIP_10460 28.3 Morganella morganii S4 flhB Flagellar biosynthesis protein FlhB
LHKJJB_10895 LHKJJB_10895 28.3 Morganella morganii S3 flhB Flagellar biosynthesis protein FlhB
HKOGLL_13955 HKOGLL_13955 28.3 Morganella morganii S5 flhB Flagellar biosynthesis protein FlhB
F4V73_RS10670 F4V73_RS10670 29.5 Morganella psychrotolerans - EscU/YscU/HrcU family type III secretion system export apparatus switch protein
PMI_RS13230 PMI_RS13230 27.7 Proteus mirabilis HI4320 - EscU/YscU/HrcU family type III secretion system export apparatus switch protein

Distribution of the homologs in the orthogroup group_313

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_313

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P69987 1.64e-72 232 39 5 358 1 yscU Yop proteins translocation protein U Yersinia pseudotuberculosis serotype I (strain IP32953)
P69986 1.64e-72 232 39 5 358 1 yscU Yop proteins translocation protein U Yersinia pestis
P35538 1.58e-54 186 33 6 355 3 flhB Flagellar biosynthetic protein FlhB Bacillus subtilis (strain 168)
P40727 4.14e-45 161 30 7 356 1 flhB Flagellar biosynthetic protein FlhB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P40702 3.47e-44 158 30 7 349 1 spaS Surface presentation of antigens protein SpaS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
O67813 5.28e-43 155 32 6 348 1 flhB Flagellar biosynthetic protein FlhB Aquifex aeolicus (strain VF5)
P96069 5.41e-43 155 31 7 355 3 ssaU Secretion system apparatus protein SsaU Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1M9 8.88e-42 152 29 5 349 3 spaS Surface presentation of antigens protein SpaS Shigella sonnei
P0A1M8 8.88e-42 152 29 5 349 1 spaS Surface presentation of antigens protein SpaS Shigella flexneri
P35652 4.65e-40 147 31 6 347 3 hrcU Hypersensitivity response secretion protein HrcU Ralstonia nicotianae (strain ATCC BAA-1114 / GMI1000)
Q62B05 1.23e-39 147 31 10 328 3 bsaZ Secretion apparatus protein BsaZ Burkholderia mallei (strain ATCC 23344)
A2S1P8 1.23e-39 147 31 10 328 3 bsaZ Secretion apparatus protein BsaZ Burkholderia mallei (strain NCTC 10229)
A3MCG6 1.23e-39 147 31 10 328 3 bsaZ Secretion apparatus protein BsaZ Burkholderia mallei (strain NCTC 10247)
A3P6Z9 6.64e-39 145 30 10 328 3 bsaZ Secretion apparatus protein BsaZ Burkholderia pseudomallei (strain 1106a)
A3NLD7 6.78e-39 145 30 10 328 3 bsaZ Secretion apparatus protein BsaZ Burkholderia pseudomallei (strain 668)
I1WUC2 6.85e-39 145 30 10 328 3 bsaZ Secretion apparatus protein BsaZ Burkholderia pseudomallei (strain 1026b)
Q3JL20 7.14e-39 145 30 10 328 3 bsaZ Secretion apparatus protein BsaZ Burkholderia pseudomallei (strain 1710b)
Q63K32 7.21e-39 145 30 10 328 3 bsaZ Secretion apparatus protein BsaZ Burkholderia pseudomallei (strain K96243)
Q2T713 7.81e-39 145 29 9 328 3 bsaZ Secretion apparatus protein BsaZ Burkholderia thailandensis (strain ATCC 700388 / DSM 13276 / CCUG 48851 / CIP 106301 / E264)
Q9ZL73 2.55e-38 143 30 3 349 3 flhB Flagellar biosynthetic protein FlhB Helicobacter pylori (strain J99 / ATCC 700824)
P76299 5.78e-38 142 28 2 349 1 flhB Flagellar biosynthetic protein FlhB Escherichia coli (strain K12)
P56416 6.76e-37 139 30 3 349 3 flhB Flagellar biosynthetic protein FlhB Helicobacter pylori (strain ATCC 700392 / 26695)
P57334 9.54e-37 139 27 1 351 3 flhB Flagellar biosynthetic protein FlhB Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q56886 1.24e-36 139 27 4 357 3 flhB Flagellar biosynthetic protein FlhB Yersinia enterocolitica
O54243 4.39e-32 126 28 6 349 3 flhB Flagellar biosynthetic protein FlhB Rhizobium meliloti (strain 1021)
Q8K9S1 8.34e-30 120 30 4 358 3 flhB Flagellar biosynthetic protein FlhB Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q89AN6 4.62e-28 115 28 9 357 3 flhB Flagellar biosynthetic protein FlhB Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q44760 1.7e-26 111 25 6 346 3 flhB Flagellar biosynthetic protein FlhB Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
O83710 1.26e-21 97 25 6 332 3 flhB Flagellar biosynthetic protein FlhB Treponema pallidum (strain Nichols)
P55723 1.3e-10 65 21 10 358 3 NGR_a00580 Probable translocation protein y4yO Sinorhizobium fredii (strain NBRC 101917 / NGR234)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS08350
Feature type CDS
Gene -
Product EscU/YscU/HrcU family type III secretion system export apparatus switch protein
Location 1728992 - 1730056 (strand: 1)
Length 1065 (nucleotides) / 354 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_313
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF01312 FlhB HrpN YscU SpaS Family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1377 Cell motility (N) N Flagellar biosynthesis protein FlhB

Protein Sequence

MSGEKTEQPTTKKRRDSRKQGMVFKSRELLLFLTSLCQITGLIFFAPQLYAGFYVLLQYILEQSVTGSLTFVISHTATLFIQELLHPLLFLAAIFIAGIIISHVIQFGLLMNISALKVDISNISPHKGIKKIISLNNVWEFIKSVIKVSLLAVLLFRVLLYHYPTFSRLVTVNIQENLVVTHHIGMILLYLFFAGLFIIVLADFVISLYGHSKKMLMSREEIKNEYKESEGNSEIKSKRRQIHKEIQQQDMRTAVKKSRCIVVNPTHYAVGIDYREEKTPLPVITFKEQNDIALIIRQIAREEGIPLIEKKYLARYLYRFGHTGSAVPPATLELIAEILYWLEKSDQDKAESAD

Flanking regions ( +/- flanking 50bp)

CACACTCATTTCTACTCTCAACATTCCACTATTATGAATTCAGAAAAATAATGAGCGGAGAAAAAACTGAACAGCCCACCACTAAAAAACGCCGTGACAGCCGCAAGCAGGGAATGGTTTTTAAAAGCCGCGAATTATTACTTTTTCTGACCTCATTGTGTCAGATTACCGGTCTGATATTTTTTGCACCTCAATTGTATGCCGGTTTTTATGTACTGCTACAATATATACTTGAACAGTCCGTTACCGGGTCACTTACTTTTGTTATCTCTCATACTGCCACTCTGTTTATTCAGGAATTACTTCATCCGTTACTTTTTCTCGCTGCAATATTTATAGCCGGGATTATTATCAGCCATGTTATTCAGTTTGGTTTGCTGATGAACATATCTGCACTGAAAGTTGATATAAGTAATATCTCACCACATAAAGGTATTAAAAAAATCATATCGCTGAACAATGTATGGGAGTTTATTAAATCCGTTATTAAAGTGAGCTTACTGGCTGTACTGCTTTTCCGGGTTCTGCTCTATCATTATCCGACATTCAGTCGGCTGGTTACGGTCAATATTCAGGAGAATCTTGTTGTCACCCATCATATCGGGATGATATTGCTTTATCTGTTTTTTGCCGGGCTGTTCATCATTGTCCTGGCTGATTTTGTTATTTCGCTGTACGGGCACAGTAAAAAAATGCTGATGTCACGGGAGGAAATTAAAAATGAATATAAGGAATCTGAAGGAAACAGTGAGATAAAAAGCAAACGCAGGCAAATTCATAAAGAGATACAGCAGCAGGATATGCGGACTGCGGTCAAAAAATCCCGGTGTATTGTTGTCAATCCGACCCACTATGCCGTTGGTATTGACTACCGCGAAGAGAAAACACCTTTACCCGTCATTACCTTTAAAGAGCAAAATGATATTGCCCTCATTATCCGCCAAATCGCCCGAGAGGAAGGTATCCCCCTCATAGAAAAAAAGTATCTGGCCCGTTATCTTTATCGATTTGGTCATACCGGCAGTGCAGTTCCTCCTGCGACCCTGGAATTAATAGCAGAAATTCTATACTGGCTGGAAAAAAGTGATCAGGATAAAGCTGAATCAGCGGATTAGCGCTACAACAATTAGCTGTAAATAAAAACAATAAAATAACATTTAATGAG