PF01253


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01253, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01253
Description Translation initiation factor SUI1

Occurence in the database

PF01253 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_933 FBDBKF_05070 20123 20446 -1 yciH stress response translation initiation inhibitor YciH Morganella morganii S1
1 group_933 EHELCC_12520 161048 161371 1 yciH stress response translation initiation inhibitor YciH Morganella morganii S2
2 group_933 NLDBIP_12860 161003 161326 1 yciH stress response translation initiation inhibitor YciH Morganella morganii S4
3 group_933 LHKJJB_12720 161048 161371 1 yciH stress response translation initiation inhibitor YciH Morganella morganii S3
4 group_933 HKOGLL_11335 161048 161371 1 yciH stress response translation initiation inhibitor YciH Morganella morganii S5
5 group_933 F4V73_RS05525 1175206 1175535 -1 yciH stress response translation initiation inhibitor YciH Morganella psychrotolerans
6 group_933 PMI_RS06330 1388071 1388394 -1 yciH stress response translation initiation inhibitor YciH Proteus mirabilis HI4320