PF01243


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01243, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 10 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01243
Description Pyridoxamine 5'-phosphate oxidase

Occurence in the database

PF01243 is associated with 10 different proteins (see tab "Protein list" and "Profile")
The 10 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1015 FBDBKF_05670 141625 142275 -1 pdxH pyridoxamine 5'-phosphate oxidase Morganella morganii S1
1 group_1015 EHELCC_11920 39219 39869 1 pdxH pyridoxamine 5'-phosphate oxidase Morganella morganii S2
2 group_1015 NLDBIP_12260 39174 39824 1 pdxH pyridoxamine 5'-phosphate oxidase Morganella morganii S4
3 group_1015 LHKJJB_12120 39219 39869 1 pdxH pyridoxamine 5'-phosphate oxidase Morganella morganii S3
4 group_1015 HKOGLL_10735 39219 39869 1 pdxH pyridoxamine 5'-phosphate oxidase Morganella morganii S5
5 group_1015 F4V73_RS03635 772688 773338 1 pdxH pyridoxamine 5'-phosphate oxidase Morganella psychrotolerans
6 group_1421 F4V73_RS09990 103264 103713 1 YhbP family protein Morganella psychrotolerans
7 group_4446 PMI_RS05975 1311426 1312043 1 pyridoxamine 5'-phosphate oxidase family protein Proteus mirabilis HI4320
8 group_1015 PMI_RS06700 1465561 1466214 -1 pdxH pyridoxamine 5'-phosphate oxidase Proteus mirabilis HI4320
9 group_1421 PMI_RS17180 3776609 3777049 1 YhbP family protein Proteus mirabilis HI4320