PF01218


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01218, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01218
Description Coproporphyrinogen III oxidase

Occurence in the database

PF01218 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_508 FBDBKF_01025 184938 185840 1 hemF oxygen-dependent coproporphyrinogen oxidase Morganella morganii S1
1 group_508 EHELCC_00520 123028 123930 -1 hemF oxygen-dependent coproporphyrinogen oxidase Morganella morganii S2
2 group_508 NLDBIP_02940 556206 557108 1 hemF oxygen-dependent coproporphyrinogen oxidase Morganella morganii S4
3 group_508 LHKJJB_04455 163447 164349 1 hemF oxygen-dependent coproporphyrinogen oxidase Morganella morganii S3
4 group_508 HKOGLL_02590 123233 124135 -1 hemF oxygen-dependent coproporphyrinogen oxidase Morganella morganii S5
5 group_508 F4V73_RS07100 1473359 1474267 1 hemF oxygen-dependent coproporphyrinogen oxidase Morganella psychrotolerans
6 group_508 PMI_RS09075 1976195 1977103 1 hemF oxygen-dependent coproporphyrinogen oxidase Proteus mirabilis HI4320