PF01212


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01212, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 19 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01212
Description Beta-eliminating lyase

Occurence in the database

PF01212 is associated with 19 different proteins (see tab "Protein list" and "Profile")
The 19 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_675 FBDBKF_02460 186250 187275 1 gLY1 Threonine aldolase Morganella morganii S1
1 group_89 FBDBKF_07875 103183 104580 1 tnaA tryptophanase Morganella morganii S1
2 group_89 FBDBKF_11135 52117 53487 -1 tpl tyrosine phenol-lyase Morganella morganii S1
3 group_675 EHELCC_02930 574070 575095 1 gLY1 Threonine aldolase Morganella morganii S2
4 group_89 EHELCC_05090 5981 7351 1 tpl tyrosine phenol-lyase Morganella morganii S2
5 group_89 EHELCC_13705 77377 78774 1 tnaA tryptophanase Morganella morganii S2
6 group_675 NLDBIP_00530 105041 106066 -1 gLY1 Threonine aldolase Morganella morganii S4
7 group_89 NLDBIP_05410 47054 48424 1 tpl tyrosine phenol-lyase Morganella morganii S4
8 group_89 NLDBIP_14150 98252 99649 1 tnaA tryptophanase Morganella morganii S4
9 group_675 LHKJJB_01505 286619 287644 1 gLY1 Threonine aldolase Morganella morganii S3
10 group_89 LHKJJB_02290 24578 25948 1 tpl tyrosine phenol-lyase Morganella morganii S3
11 group_89 LHKJJB_08700 60100 61497 -1 tnaA tryptophanase Morganella morganii S3
12 group_675 HKOGLL_01545 292130 293155 1 gLY1 Threonine aldolase Morganella morganii S5
13 group_89 HKOGLL_08250 60100 61497 -1 tnaA tryptophanase Morganella morganii S5
14 group_89 HKOGLL_15670 48018 49388 1 tpl tyrosine phenol-lyase Morganella morganii S5
15 group_675 F4V73_RS04835 1027532 1028557 1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme Morganella psychrotolerans
16 group_89 F4V73_RS08140 1690832 1692202 1 tyrosine phenol-lyase Morganella psychrotolerans
17 group_89 F4V73_RS13145 245827 247224 -1 tnaA tryptophanase Morganella psychrotolerans
18 group_675 PMI_RS06130 1344809 1345834 1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme Proteus mirabilis HI4320