Orthogroup:group_88


Homologs in group_88

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12 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_07495 FBDBKF_07495 Morganella morganii S1 gltP Na+/H+-dicarboxylate symporter
FBDBKF_18790 FBDBKF_18790 Morganella morganii S1 gltP Na+/H+-dicarboxylate symporter
EHELCC_16985 EHELCC_16985 Morganella morganii S2 gltP Na+/H+-dicarboxylate symporter
EHELCC_17165 EHELCC_17165 Morganella morganii S2 gltP Na+/H+-dicarboxylate symporter
NLDBIP_13770 NLDBIP_13770 Morganella morganii S4 gltP Na+/H+-dicarboxylate symporter
NLDBIP_18365 NLDBIP_18365 Morganella morganii S4 gltP Na+/H+-dicarboxylate symporter
LHKJJB_09080 LHKJJB_09080 Morganella morganii S3 gltP Na+/H+-dicarboxylate symporter
LHKJJB_09260 LHKJJB_09260 Morganella morganii S3 gltP Na+/H+-dicarboxylate symporter
HKOGLL_08630 HKOGLL_08630 Morganella morganii S5 gltP Na+/H+-dicarboxylate symporter
HKOGLL_08810 HKOGLL_08810 Morganella morganii S5 gltP Na+/H+-dicarboxylate symporter
F4V73_RS13620 F4V73_RS13620 Morganella psychrotolerans - dicarboxylate/amino acid:cation symporter
F4V73_RS13805 F4V73_RS13805 Morganella psychrotolerans - dicarboxylate/amino acid:cation symporter

Distribution of group_88 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_88 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_88

Orthogroup content: 12 members

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This page summarizes the annotation of all members of the orthologous group group_88.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 gltP 10
2 - 2

Product

# Product Occurence
1 Na+/H+-dicarboxylate symporter 10
2 dicarboxylate/amino acid:cation symporter 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1301 12 C Energy production and conversion (C) Na+/H+-dicarboxylate symporter

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00375 12 Sodium:dicarboxylate symporter family

Annotations of the 356 SwissProt hits

Annotation Number of occurrences
Aerobic C4-dicarboxylate transport protein 5
C4-dicarboxylate transport protein 153
C4-dicarboxylate transport protein 1 9
C4-dicarboxylate transport protein 2 9
C4-dicarboxylate transport protein 3 2
C4-dicarboxylate transport protein 4 1
Excitatory amino acid transporter 2
Excitatory amino acid transporter 1 5
Excitatory amino acid transporter 2 3
Excitatory amino acid transporter 3 5
Excitatory amino acid transporter 4 4
Excitatory amino acid transporter 5 2
Glutamate transporter homolog 1
L-cystine transporter TcyP 1
L-cystine uptake protein TcyP 9
Neutral amino acid transporter A 3
Neutral amino acid transporter B(0) 6
Proton/glutamate-aspartate symporter 2
Proton/sodium-glutamate symport protein 3
Putative sodium-dependent excitatory amino acid transporter glt-3 1
Putative sodium-dependent excitatory amino acid transporter glt-4 1
Putative sodium-dependent excitatory amino acid transporter glt-6 1
Serine/threonine transporter SstT 127
Uncharacterized symporter HI_1154 1

Protein length

Min length 430
Max length 437
Mean length (sd) 431.8 (1.7)
Median length 431.5

Protein length distribution