PF01058


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01058, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 21 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01058
Description NADH ubiquinone oxidoreductase, 20 Kd subunit

Occurence in the database

PF01058 is associated with 21 different proteins (see tab "Protein list" and "Profile")
The 21 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_790 FBDBKF_03705 143097 143879 -1 hycG Ni,Fe-hydrogenase III small subunit Morganella morganii S1
1 group_1898 FBDBKF_14160 28495 29169 -1 nuoB NADH-quinone oxidoreductase subunit B Morganella morganii S1
2 group_2403 FBDBKF_19265 522 1655 1 hybO hydrogenase 2 small subunit Morganella morganii S1
3 group_790 EHELCC_06830 103224 104006 1 hycG Ni,Fe-hydrogenase III small subunit Morganella morganii S2
4 group_2403 EHELCC_07550 247613 248746 1 hybO hydrogenase 2 small subunit Morganella morganii S2
5 group_1898 EHELCC_08120 87816 88490 1 nuoB NADH-quinone oxidoreductase subunit B Morganella morganii S2
6 group_790 NLDBIP_07155 103097 103879 1 hycG Ni,Fe-hydrogenase III small subunit Morganella morganii S4
7 group_2403 NLDBIP_07875 247486 248619 1 hybO hydrogenase 2 small subunit Morganella morganii S4
8 group_1898 NLDBIP_08445 87816 88490 1 nuoB NADH-quinone oxidoreductase subunit B Morganella morganii S4
9 group_1898 LHKJJB_05820 168669 169343 -1 nuoB NADH-quinone oxidoreductase subunit B Morganella morganii S3
10 group_790 LHKJJB_06690 66843 67625 1 hycG Ni,Fe-hydrogenase III small subunit Morganella morganii S3
11 group_2403 LHKJJB_07410 211232 212365 1 hybO hydrogenase 2 small subunit Morganella morganii S3
12 group_2403 HKOGLL_03520 21022 22155 -1 hybO hydrogenase 2 small subunit Morganella morganii S5
13 group_790 HKOGLL_04240 165762 166544 -1 hycG Ni,Fe-hydrogenase III small subunit Morganella morganii S5
14 group_1898 HKOGLL_05095 72407 73081 1 nuoB NADH-quinone oxidoreductase subunit B Morganella morganii S5
15 group_1898 F4V73_RS02775 585197 585871 1 NADH-quinone oxidoreductase subunit B Morganella psychrotolerans
16 group_790 F4V73_RS11165 373557 374339 1 NADH-quinone oxidoreductase subunit B family protein Morganella psychrotolerans
17 group_2403 F4V73_RS12025 559244 560365 1 hybO hydrogenase 2 small subunit Morganella psychrotolerans
18 group_2403 PMI_RS00150 53376 54500 1 hybO hydrogenase 2 small subunit Proteus mirabilis HI4320
19 group_1898 PMI_RS08640 1887497 1888171 -1 NADH-quinone oxidoreductase subunit B Proteus mirabilis HI4320
20 group_790 PMI_RS12460 2762452 2763234 -1 NADH-quinone oxidoreductase subunit B family protein Proteus mirabilis HI4320